Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01645 ATGGATTGCCGCATCTATGGCGTCACCGTCCTTCTCTTCCTCCTTCCAACCATCACATTCTCTCTCTCACAAGGCCAAATAAACTCAAACTCAATCCTCGTGGCTCTGTTGGACTCGCATTACACTGAAGTTGCTGAGCTAGTGGAAAAAGCCATGCTCCTTCAGACGCTCGAAAACACGGTGATGAACCACAACATCACAATCTTCGCACCCAGAAACGAAGCTCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTCGAACCACGCAACCTGCAGTCTCTCCAAACCCTTCTCATGTCCCACATCGTCCCCAAAAGAATCACCAAACCCGATTACCGATCCGGGTTAAGTAACCCAGCTCGACCCACCCGACACAAAACCCTAGCCCCCAATCACCACCTCTCTCTCCAGACCGTTAATTCCACTCACTGGAACGTCGACTCTTCTCGCGTCACCCACCCGGATTCCCTGACCCGACCCGACGGCGTCATCCATGGCATCGACACGCTCATCATTCCTCGCTCCGTACAAGACGACTTCAACCGCCGCCGCAACCTCATCTCCATCGCCGCCGTGAAACCCGAATCCGCTCCGGAGGTTGACCCGCGCACCCACCGCTTGAAAAAACCAGCTCCCCCGTCGCCGGCAGGCTCCCCACCTGTGCTTCCGATCTACGACGCGATGGCGCCGGGACCCTCACTGGCTCCGGCGCCTGCGCCTGGACCCGGTGGACCCCACCATCACTTCAACGGAGAGAAACAGGTGAAAGACTTCATCCAAACGCTCCTCCACTACGGTGGTTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGAAGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAACGACGAAGCGATGGCGAAGTTAACGACGGACCAGCTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGAAAGGTCCGTTACGACACGTTACGGTTGCCTCATAAGGTGACGGCGCAGGAGGCTGATGGCTCCGTCAAGTTCGGTCACAGCGACGGGTCCGCGTATTTGTTCGACCCGGATATTTTCACGGATGGACGGATCTCCGTTCAGGGAATCGACGGCGTTCTGTTACCACCTCAGGAGGAAGAGACCGGGCCTGTGACCCGGGCCCAACCTGCTAAGGTCGTCGTTAAGCAAAGAAGAGTTTCTACGCTAAAGTTTGAATGGCATGACAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGTCAGAATTCCAGATTCATCTCTTGTCAATAAACTGCTCTTATCAGCATGCTAGCAAGACTCGTTAA 1419 0.5412 MDCRIYGVTVLLFLLPTITFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPDYRSGLSNPARPTRHKTLAPNHHLSLQTVNSTHWNVDSSRVTHPDSLTRPDGVIHGIDTLIIPRSVQDDFNRRRNLISIAAVKPESAPEVDPRTHRLKKPAPPSPAGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHSDGSAYLFDPDIFTDGRISVQGIDGVLLPPQEEETGPVTRAQPAKVVVKQRRVSTLKFEWHDRKIVGNSMLDAWKLWSEFQIHLLSINCSYQHASKTR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01645 472 SMART fasc_3 67 177 IPR000782 -
Vimu5g01645 472 SMART fasc_3 299 404 IPR000782 -
Vimu5g01645 472 Pfam Fasciclin domain 40 176 IPR000782 -
Vimu5g01645 472 Pfam Fasciclin domain 283 403 IPR000782 -
Vimu5g01645 472 ProSiteProfiles FAS1/BIgH3 domain profile. 258 386 IPR000782 -
Vimu5g01645 472 FunFam Fasciclin-like arabinogalactan protein 16 253 404 - -
Vimu5g01645 472 SUPERFAMILY FAS1 domain 31 177 IPR036378 -
Vimu5g01645 472 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 22 431 IPR044654 -
Vimu5g01645 472 MobiDBLite consensus disorder prediction 197 254 - -
Vimu5g01645 472 Gene3D FAS1 domain 33 176 IPR036378 -
Vimu5g01645 472 Gene3D FAS1 domain 250 404 IPR036378 -
Vimu5g01645 472 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Vimu5g01645 472 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01645 Vimu-Chr5 28037850 28040007 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01645 - - gmx:100790599 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00854 4 6843453 6845516 Vimu5g01645 5 28037850 28040007 PCT