Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00854 ATGTTCCAGCTGGCTAGTGGACCCCATTCTAATGCTGTCCGATTCTTCCCTTTCCAACCAACAAAGAATCGCCACGTGTTCACCCGCTTCCCAATGCAACCGACACATTCACTTGCGCTAATTTGCTATGCGCTAAATTCTGCCGCCAACTCTGCCATTCCAATTTCACTGCCTTTCGTAAAAAAGAAAAGAAAAGAAAAATCACTTTCTGTGATTAGCGTACATGATATTATGCTTCGGGTTATTTATCCACCAGACCGAAAACCAACAGAGGAATCTGGTGGTCGGGTTACTCTCAACCGCATTCCGGCCATGGGTCGCCGCATCTATGGCGTCTCCGACCTCCGCGTCTTCTACACCGTTGCATTAACAGCGCGAGACTCTTCTCCCTCGTCACCGACGGCTCAGATTAACTCCAATTCAATCTTAGTTGCTCTTCTGGATTCGCATTACACAGAACTTGCAGAGCTTGTGGAAAAAGCCATGCTGTTGCAGAAACTAGAGGAAACCGTGGCGGCACACAACATAACGATCTTCGCTCCGACCAACGAAGCTTTGGACCGGAACCTCGACTCTGATTTCAAGCGCTTCCTTCTCGAACCCGCCAACCTTCACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCATCCGAATCGGATCCCAAACCCTAATCCGCCACGTCACCACTCTCTCCAACCACCAAATTCGTCTCTCCGAAAACCTCACCACCGTCGACCAGGCCCGCGTCACCCACCCGGATGCCCTGACCCGACCCGACGGCGTCATACACGCCATCGACCGCATCCTCTTCCCCCGCTCTGTCGAGGACGACTTCAACCGCCGCCGCACTCTCCGTTCCATCTCCGCCGTCAAGCCCGAGGGAGCCCCGGAGGTCGACCCGAGAACTCACCGCCTCAAAAAGCCTCCCCCGCCGGGGAAACCTGGCTCCCCGCCTGCTCTTCCGATCTACGACGCCATGTCTCCGGGACCTTCCCTGGCTCCGGCGCCGGCGCCGGGGCCAGGTGGACCGCACCACCATTTCAATGGCGAGAAGCAGGTGAATGATTTCATCCACACGCTCCTCCACTATGGTGGATACAACGAGATGGCGGACATTCTCGTGAATCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTGTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGACGAAGCCATGGCGAAGTTAACGACGGAGCAGTTGAGTGAACCGGGTGCGCCGGAGCGGATAATGTATTATCACATTATACCGGAGTATCAGACTGAAGAGAGCATGTACAATGCAGTTCGAAGGTTTGGGAAGGTTCGTTACGATACTCTGCGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCCGTTAAATTCGGGCATGGGGATGGGTCGGCGTATTTGTTTGACCCGGATATTTACACGGATGGTCGGATCTCAGTTCAGGGGATTGACGGGGTTTTGTTTCCGACGGAAGAGGAGGAGGAGGAGCGGGTTAAAACCACTACCCGTTCGGGTCAACCCGCTGCAAAAGTTGTTTTCAAGCACAGGAGAGGTGGGACTGGAAGAGTTGAAATTTGTTCTGTGTTAGGTTGGTTTCTTTTGGGCAGAAAACTAAATGAAGACATGTCTGTCTAG 1668 0.536 MFQLASGPHSNAVRFFPFQPTKNRHVFTRFPMQPTHSLALICYALNSAANSAIPISLPFVKKKRKEKSLSVISVHDIMLRVIYPPDRKPTEESGGRVTLNRIPAMGRRIYGVSDLRVFYTVALTARDSSPSSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEETVAAHNITIFAPTNEALDRNLDSDFKRFLLEPANLHSLQTLLLSHIIPIRIGSQTLIRHVTTLSNHQIRLSENLTTVDQARVTHPDALTRPDGVIHAIDRILFPRSVEDDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPGKPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGEKQVNDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYILTVLAPNDEAMAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTEEEEEERVKTTTRSGQPAAKVVFKHRRGGTGRVEICSVLGWFLLGRKLNEDMSV 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00854 555 Gene3D FAS1 domain 120 274 IPR036378 -
Vimu4g00854 555 MobiDBLite consensus disorder prediction 311 326 - -
Vimu4g00854 555 Pfam Fasciclin domain 394 499 IPR000782 -
Vimu4g00854 555 Pfam Fasciclin domain 150 273 IPR000782 -
Vimu4g00854 555 SMART fasc_3 396 501 IPR000782 -
Vimu4g00854 555 SMART fasc_3 177 274 IPR000782 -
Vimu4g00854 555 ProSiteProfiles FAS1/BIgH3 domain profile. 138 271 IPR000782 -
Vimu4g00854 555 MobiDBLite consensus disorder prediction 287 351 - -
Vimu4g00854 555 SUPERFAMILY FAS1 domain 334 501 IPR036378 -
Vimu4g00854 555 ProSiteProfiles FAS1/BIgH3 domain profile. 355 483 IPR000782 -
Vimu4g00854 555 Gene3D FAS1 domain 379 500 IPR036378 -
Vimu4g00854 555 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 121 542 IPR044654 -
Vimu4g00854 555 FunFam Fasciclin-like arabinogalactan protein 16 350 501 - -
Vimu4g00854 555 SUPERFAMILY FAS1 domain 137 274 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00854 Vimu-Chr4 6843453 6845516 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00854 - - gmx:100815434 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00854 4 6843453 6845516 Vimu5g01645 5 28037850 28040007 PCT