Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01641 ATGGCGGAAACCCTAAGCCCCAACCCATTGGTGGGTCAGAAGCAGAGGTTCCGCATTCAGTCCCCCACCAGCACCTTCTTCTTGGGCTCCAACAACGACCAGCTCGAGCGGGCCGAGGCCCGCGCGGCCCGCGCAGCCGCCATCCGCCGCAAGAGCCTCGGCTTCAGCCAACCTCTTCTGGCCAACTCGGATCCCTGCCTCAACAAACAGCAAATCCTCGATTTGTTCCAAAACTGCATCAAACTCGCCAGCGAGAATAAAATTAATCAGAAAAATACATGGGAGTTGAACCTGATCGATCACCTTACTGATATCATCAAGGCCGAACAAGAAGATGACTTGGAGACTAATTTTCAAAAAGCAAGCTGCACTCTTGAGGCTGGAGTCAAAATTTATTCATTAAGAGTAGATTCAGTGCATTCTGAGGCATATAAAGTTCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGACACTAGCCTGGATGGTGTTAATATTGAAAGTGGAGGAGAAGAAAGCAGGAAAGAAACAAGCAAAAAGTTGTCACCTTTGTCAACATTGGAATCATCTTTCGAAGCACTTAATGTAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCACTCTATCGCCAGACAACAGCAAAATTTGATGAAGGTGGAGCCAAGGGTCTTTTAATGAATAATCTTGGTGTATACGGTGGATGTAGGGTGCTCTTTGATTCACTAGAAGTTCCTGCGAAGTGTATGGCAAAACAAAATCAATCTGATATTTCAGATACTATCGATCTTTCTTTTGTCAAAGATTGTATCGAGCAGATGGTGTTGGACATGCGTGTGAAGGATGAAATTTCTCCAACTCTGACGACTATAGTAAACTTATTTGATGAAAGTAACAGAAGGCCCACTGATGTTCAACATCACGACAATAATTTAGCTGAAGATCTTGACACTTTTAATAATGAAAGTGGTTTTGACAGAGAAGAATATGAGAACAGCAATGCCTGGAGTGACGATCACGATGACCATATGGTTGTTGCCGATGTAGGCTATAATGATGATGCAGATCCAAGTTTTCCCAATTACCCCCAGGACACCGATGGGCCATTTCCCTCTCCAGACGCTGATATGGATGACAGATTTGACAGTGTTGACGGATATTTGTTTTTGAGTCTGGGTCTTAATTCTAAGCAAAACGCATGGGCAGGCCCAGATCATTGGAAGTATCGAAAATCCAAAGCCTCAGAGGTTCATCCTACTTCCGAAGATGGGTCGACCCTAAAAAGTAGGCAGCCAAAGAGTAAGAGACAGGCTGAAGTTGAATTAAATTTCACAAATTCTCTTGAGAAGGAAATGCTAGATATATTTTCTTCTCCCAAGAATCCCAAATCGTTACTACTCCCCGAAAGCAAATTGCCTTGCAATACAAAACTTCCCGAGGACTGCCACTATCAGCCAGAGGATCTTGTCAAGTTGTTCCTTCTGTCTAATGTGAAGTGTCTCGGGAGGAGGGCAAACAGGTTCCCAGACGGAGCTAGAGAACAATCCAATGAATATGAATCATTCCCTACTTGGGACAGTGGAAGTGTTGGTGGGGATGACTTTGGTGACTACGGAGGTGATCTTCATAGTGATGTGGAGGACTCCAACACTCTTATTAGTCAGCCTCGCCAGGTCAATAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTTGATGTTCATGCACTAAAAATTACTATTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTCACAGGGTCAAAAAGATACCTTATCTTTCAGGAATATACTGGCGAACTTTCCTAGCGAATGCAATGCTGCCGCAACCGTTAGTGACATCTCTCCTCACTTGTGCTTCATATGTCTATTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAACTGCTCCAACTTAGATGATCTTACCATATTCCTTCCACACGTTGCTGACTCTGTAAGGGGCACAGTTTAG 2007 0.439 MAETLSPNPLVGQKQRFRIQSPTSTFFLGSNNDQLERAEARAARAAAIRRKSLGFSQPLLANSDPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEQEDDLETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTSLDGVNIESGGEESRKETSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRVLFDSLEVPAKCMAKQNQSDISDTIDLSFVKDCIEQMVLDMRVKDEISPTLTTIVNLFDESNRRPTDVQHHDNNLAEDLDTFNNESGFDREEYENSNAWSDDHDDHMVVADVGYNDDADPSFPNYPQDTDGPFPSPDADMDDRFDSVDGYLFLSLGLNSKQNAWAGPDHWKYRKSKASEVHPTSEDGSTLKSRQPKSKRQAEVELNFTNSLEKEMLDIFSSPKNPKSLLLPESKLPCNTKLPEDCHYQPEDLVKLFLLSNVKCLGRRANRFPDGAREQSNEYESFPTWDSGSVGGDDFGDYGGDLHSDVEDSNTLISQPRQVNKIEVQYDKTSKQVDVHALKITIWDHVQESVKLPSQGQKDTLSFRNILANFPSECNAAATVSDISPHLCFICLLHLANEKGLSIQNCSNLDDLTIFLPHVADSVRGTV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01641 668 MobiDBLite consensus disorder prediction 155 183 - -
Vimu5g01641 668 Pfam Condensin complex subunit 2 545 655 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 Pfam Condensin complex subunit 2 67 506 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 PIRSF Condensin_H 263 532 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 PIRSF Condensin_H 535 658 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 PIRSF Condensin_H 1 271 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 MobiDBLite consensus disorder prediction 413 440 - -
Vimu5g01641 668 PANTHER CONDENSIN COMPLEX SUBUNIT 2 20 658 IPR022816 GO:0000796|GO:0007076
Vimu5g01641 668 MobiDBLite consensus disorder prediction 354 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01641 Vimu-Chr5 27972209 27977614 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01641 K06676 - gmx:100799781 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01641 5 27972209 27977614 Vimu5g01641 5 27972209 27977614 ECH
Vimu4g00861 4 6902931 6906705 Vimu5g01641 5 27972209 27977614 PCT