Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00861 ATGGCGGAAACCTTTAGCCCTGATCCAACCATGGCCCACAAAAAGAGGGTTCCCATGTCCGCTCGTATGCAGTCTCCGACAAGTGCCTTCTTCGTGGGCTCCAACGACGACCAACTCGAACGGGCCCAGGCTCGTGCAGCCCGCGCCGCCGCCATCCGCCACAACTCCCTTGCCGTCAACTTCCATTCGCAGCCTCCCAAGTCTCCTTCCTGTCTCAACAAGCACCAGATTCTCGAGTTGTTCCACAACTGCATAAAGCTCGCTTCCGAAAATAAAATTAATCAGAAAAACACGTGGGAGTTGGATTTGATCGATCACCTCACCGATATTATTAGGGTTGAAGAAGGGAATCACGTGGAGACTAATTTTCAAATAGCAAGCTGTACTCTTGAAGCTGGAGTCAGAATATATTCCTTGAGGGTGGATTCGGTGCACTCGGATGCATATAAAGTCCTGGCTGGAATGAATAGAGCAGGCCAAGATACCCAGGAAGGCGCTGCTTTAGGGAGTGTTAATGCTGAAAATGGAGAGGCAAGCAGGAAGGAAGTTGACAAAAAGTTGTCGCATTGGTCAACATTGGAATCATCTTTTGAGGTTCTTAATGTAAAGAAGTTTGATGGTGATCTCAAATCTCTTTCTGTTCGTCACTTGTTTGTCGTGTGGGACAGAGATAGTGCTGACAATGTATTTGTTTGTTCAGTTGCATTCGCAGTGGATCCACTCTATCACCATACATCAGCACAATTTGATGAAGGTGGAGCCAAAGGCCTTTTGATGAATAATCTTGGTGTATATGGTAAATGTAGGGTGCTCTTTGATTCATTAGAAGTGCCGCCGAAGTGCATAATTAGTCAAAATGATCGTGATATCTCAGATACAATTGATCTTTCTTTCGCCAGAGATTGTGTTGAACGGATGATATTGAATATGCATACGAAGGATGTAATCTCTCCAACTCTCAGGATAATAGTAAACCAATTTGATGAAAATAATGGAAGGCCTTTTGATTTTCAATCTTCTGGCGAGAAATCAGCTGAAGAATTTGGTGCCGCTATTGATTGTCAACTTGCCAATGGAAAAGAAGGATATGAGAACTGCTCATCTTGGAGTTATGATCACGATAGCCAAACATTTGCTGCTGAATGGGGCTTTAGTGACGCAGACCCTAGTTTTCCAAGTTACCACGAGGAAAAAGAACCTAATATGGATGACATATTTGACAATGTTGATGGATATTTATTTTTGAGTCTGGGTTTTAGGTCAAAAAAAAATTCATGGGCAGGCCCTGATCATTGGAAATATCAAAAAGTTCAAGGCTCAAAGTCAAAGGTTCGTTGTACTTCCGAGGATGAGTTGATGATCCAGAAAACCAGGCAGCGAAGGACAAAGAGAGAGGTCAAAGTTGATTTAGAATTCACTAGTTTTCTGGAGGAAAAAATACCTGATATTTTTTCTCCTCCCAAGAATCCGAAATCATTACTGGTCTCAGAAAATATATTACCTTGCGTTACAAAACTTCCAGAGGACTGGCACTACGAACCAGAGGATCTTGTCAATTTATTTCTTTTGCCTCATGTAAAGTGTATTGGGAGGAGAGCGAGAAAGGTACCAGATGTCTTAGAAGAACAATGCTATAATAACGAACCATTCCCTTCCTGGGATAATGGAAGTGTTTGTGATGGTGATGTCACTGATGTAAATAATGACACGGAAGACTCTTCTAGCACACTTATTTCTCTGCCTCGTCAAATCAATAAAATTGAAGTCCAGTATGACAAAACATCCAAACAAGTCAATGTGCAGGCTCTGAAAAAAACACTTTGGGACCATATTCAAGAATGTATTCAACTTCCGTTTCAGGGTCAGAAAGAAAAGGTATCTTTCAGGAATGTATTGACAAACTTTCCAAGTAAATGTAATGCTGCTGCAACTATTAGTGACATATCTCCACATTTGTGTTTCATATGCCTATTACATTTGGCTAATGAGAAGGGGTTGAGCATCCAAAGCTGCCCCAACTTGGATGATCTTAGTATATGCCTACTTGATGATGGTGCCACTAACACCAGAACAATTTAG 2079 0.418 MAETFSPDPTMAHKKRVPMSARMQSPTSAFFVGSNDDQLERAQARAARAAAIRHNSLAVNFHSQPPKSPSCLNKHQILELFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRAGQDTQEGAALGSVNAENGEASRKEVDKKLSHWSTLESSFEVLNVKKFDGDLKSLSVRHLFVVWDRDSADNVFVCSVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDSLEVPPKCIISQNDRDISDTIDLSFARDCVERMILNMHTKDVISPTLRIIVNQFDENNGRPFDFQSSGEKSAEEFGAAIDCQLANGKEGYENCSSWSYDHDSQTFAAEWGFSDADPSFPSYHEEKEPNMDDIFDNVDGYLFLSLGFRSKKNSWAGPDHWKYQKVQGSKSKVRCTSEDELMIQKTRQRRTKREVKVDLEFTSFLEEKIPDIFSPPKNPKSLLVSENILPCVTKLPEDWHYEPEDLVNLFLLPHVKCIGRRARKVPDVLEEQCYNNEPFPSWDNGSVCDGDVTDVNNDTEDSSSTLISLPRQINKIEVQYDKTSKQVNVQALKKTLWDHIQECIQLPFQGQKEKVSFRNVLTNFPSKCNAAATISDISPHLCFICLLHLANEKGLSIQSCPNLDDLSICLLDDGATNTRTI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00861 692 PANTHER CONDENSIN COMPLEX SUBUNIT 2 233 681 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g00861 692 Pfam Condensin complex subunit 2 235 542 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 Pfam Condensin complex subunit 2 567 679 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 Pfam Condensin complex subunit 2 24 208 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 PIRSF Condensin_H 4 211 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 PIRSF Condensin_H 228 301 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 PIRSF Condensin_H 288 574 IPR022816 GO:0000796|GO:0007076
Vimu4g00861 692 PIRSF Condensin_H 554 684 IPR022816 GO:0000796|GO:0007076
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00861 Vimu-Chr4 6902931 6906705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00861 K06676 - gmx:100777082 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00861 4 6902931 6906705 Vimu4g00861 4 6902931 6906705 ECH
Vimu4g00861 4 6902931 6906705 Vimu5g01641 5 27972209 27977614 PCT