Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01639 ATGGCCAACCAAAACTCTTTCCCCCTCTATCAGAAACACTGGTACAACCACACTTATAAAAGGGTAACGGAGAGCTTACTCTTAGTCCTTCTCTTGTTGCAACTTGGTTACCGCGCTATCTCTGTCAGCAACTACTCATTCCCTTGGTTTCTTGCTTTTGTCTGCGAATCATGGTTCACCATCTCTTTGTTTTTCACCCTCTCCACTCAGTGGAGTCCAGCAGAAATCAAAACCTACCCAGAACGTCTCTTACAAAGTGTGCAGGAGGTTCCAGCAGTGGATATGTTTGTGACAACAGCAGACCCTGTGCTTGAACCACCTATTATCACAGTGAACACTGTGTTGTCTCTGTTAGCACTTGATTATCCACCTCACAAGCTTGCTTGTTATGTCTCTGACGATGGTTGTTCACCCCTAACCTTCTACGCTCTTCAAGAAGCCTCCAAATTTGCAAAGTTTTGGGTACCATTCTGTAAGAAGTATGATGTGCAAGTTAGAGCTCCCTTCAGATACTTCTCTGCCAAACCACAAGTCTCAACACCCACCAACACACCAGAATTCAAACAAGAATGGTTACAGATGAAAAATATGTATGATGATCTTAGCCAAAAAATAGAATTGGAAACATCCCAAAAATCAAATCCGAGTCATGGAGACTTTTCTGTTTTCTCAAACACTGAGAGGACAAATCATCCATCAATAATCAAGGTTATATGGGAGAACAAGGAAGACCTTGAAGATGGGTTACCTCATTTGATCTATATATCTAGAGAGAAGAGGCCAAAACATTCTCATCATTTCAAAGCTGGTGCCATGAATGTATTGACAAGAGTTTCTGGGTTGATAACCAATGCTCCCTTTATGCTAAACGTGGACTGTGACATGATCGTAAATAATCCAAAGATTGTTCATCATGCATTGTGCATTTTACTCGATCCCAAAGGACAAAAAGAAGTTGCATTTGCTCAATGTCCCCAACAATTCTACGCTACACTGAAGGACGATCCTTTTGGAAACCAGATGGCAATTTTGATGAAGGTCATTGAAATTAAATACTAA 1059 0.4098 MANQNSFPLYQKHWYNHTYKRVTESLLLVLLLLQLGYRAISVSNYSFPWFLAFVCESWFTISLFFTLSTQWSPAEIKTYPERLLQSVQEVPAVDMFVTTADPVLEPPIITVNTVLSLLALDYPPHKLACYVSDDGCSPLTFYALQEASKFAKFWVPFCKKYDVQVRAPFRYFSAKPQVSTPTNTPEFKQEWLQMKNMYDDLSQKIELETSQKSNPSHGDFSVFSNTERTNHPSIIKVIWENKEDLEDGLPHLIYISREKRPKHSHHFKAGAMNVLTRVSGLITNAPFMLNVDCDMIVNNPKIVHHALCILLDPKGQKEVAFAQCPQQFYATLKDDPFGNQMAILMKVIEIKY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01639 352 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 220 351 IPR029044 -
Vimu5g01639 352 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 10 347 - -
Vimu5g01639 352 Pfam Cellulose synthase 93 345 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01639 Vimu-Chr5 27951880 27958143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01639 1 335 Glycosyltransferase AT2G32530 50.733 1.48e-113 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01639 - - gmx:100500469 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01639 5 27951880 27958143 Vimu5g01639 5 27951880 27958143 ECH
Vimu4g00865 4 6938200 6945377 Vimu5g01639 5 27951880 27958143 PCT