Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00865 ATGGCGAATGAGAAAAGTCTCCCTCTTTATGATAAAATTTGGGTGAAGCACACGTTTTCAAGAACAATGGATTCCTTGATTTTGCTCCTCCTCTTCCTGCTTCTCGGTTATCGTATTTTCCTTGATGACAGCAACACCTTCCCTTTCTTCGTTGCTGTCATATGCGAATCATGGTTCACTTTTGCTTGGATTCTCGTCATCAACACCAAATGGTCTCCTGCATACACCACAACCTACATAGATCGTCTTTTGCTTCGGGTACCCGAACCTGAGCTTCCATCAGTTGACCTATTTGTGACAACAGCGGACCCTGTTCTTGAGCCACCTATCATCACAATCAACACTGTCTTGTCTCTCTTGGCACTTGATTATCCTACCAACAAGCTTGCTTGCTATGTTTCTGACGATGGATGCTCCCCTCTTAACTTCTACGCCCTTCTCGAAGCTTCTAAGTTTGCCAAGCTTTGGGTACCCTTCTGTAAGAACTACAACATTCAACTCAGAGTGCCCTTCAGATACTTCTCTAACAACACCAACCCTGCAAACAATGATGATTCACCAGAATTTATTCAAGACTGGCGAAGACTCAAGAAGGAGTATGAGGACCTTTGCAGTAAAATTATGAATGCATCACAAAACTCGATTCCACTTATAGGAGAATTTGCTATCTTCTCCGATACACAGCTTAGAAACCATCCAACCATAATTAAGGTAATATGCGAAAACAAAGGTCTTTCAGACGAGTTACCACACTTAGTCTACGTATCTAGAGAAAAGAAGCAGGAACATCCACATCATCATAAAGCTGGTGCCATGAATGTGTTGACAAGAATTTCTGGAGTGATGACAAATGCTCCTTTTATCCTGAACGTAGATTGTGACATGTATGTTCATAATCCAAAGATTGTCCAACACGCCCTCTGCATTTTACTAGATTCAAAAGGAGAGAAAGAAGTTGCATTTGCACAATGTATCCAGCAATTCTACGATGGACTGAAGGATGACCCTTTTGGAAATCAACTTGTGGCAAAGTTTCTGTACCTAGGTGGTGGGTTAGCAGGGATCCAAGGAATATTTTACGTTGGAACAAATTGCTTGCACAGAAGAAAAGTAATTTATGGCCTTTCTCCTGATCATCACATTCGAAATGGAAAGAAGCATCATGACATAACAGATGAAAGGAAAAGAATATTTGGAAGTTCAAAGAGGTTTTTGGAATCAGCTGCTAATGCTTTGGAAGGGAAGACATTGGCTTCCAATGATAATATTTGGAAATATGTTGAGGCAGCCAAAGAAGTTGGCAGTTCTGAATATGACTATGGTACTGCTTGGGGTAAACAGGTGGGTTGGATGTATGGATCAACATCAGAAGATGCACTCACAGGGCTGAAAATACACACACAAGGATGGAGATCTGAAACCTGTTCACCAGAACTTACACCCTTTATGGGTTGCTCACCTCAGGATATTATAAGTGTAATGAGTCAACAAAAGAGATGGGCCTCAGGGTTGCTTGAGATTCTCCTAAGCAAACACTGTCCAATTTTTGGAACCCTGTTTGGTAAGCTCCAATTCAGACAGTGTTTGGGTTATCTTTGGGTACTCACTTGGCCCGTACGATCTCTTCCTGAACTTTGCTACACTCTTCTCCCTGCTTATTGCATCATCAACAACTATACTTTCTTGCCTAAGGAACTCGGACAATGGATTGTGGTGACTATGTTTGTGATTTACAACATAGCTACTTTTGTAGAGTACTTGAGAACAGGGATGTCAATTCGAACATGGTGGAACAGTGAAAGAATGGGAAGGATAACCACCACAACTGCTTGGTTTTTTGGATTTTTGCACATCATGCTTAAGCTATTCGGAATATCAGACAGTGTGTTTGAAATAACAAAAAAAGAGCAATCATCAATGAATGAGGGTGCTAAAGAAAACAATGGTAGATTCACTTTCAACAACTCTAGCATTTTTGTACCTGGTACAACTATTTTGCTTATTCAACTCACAGCACTGGTTACCAAGTTGTTGGGATGGGAAGCACCTGTTAGAAATGGTCATGGATCCGGCATAGGAGAACTGTTTTGCTGTTCATATTTGGTTGTGTGCTACTGGCCATTTTTCAAAGGCTTATTTGGCAAAGGAAAATATGGAATTCCCTTTTCCACGATATGCAAGTCAGTGCTGTTGACTCTTCTTTTTCTGTATTTTTGCAGAGCTTATGAATGA 2232 0.4086 MANEKSLPLYDKIWVKHTFSRTMDSLILLLLFLLLGYRIFLDDSNTFPFFVAVICESWFTFAWILVINTKWSPAYTTTYIDRLLLRVPEPELPSVDLFVTTADPVLEPPIITINTVLSLLALDYPTNKLACYVSDDGCSPLNFYALLEASKFAKLWVPFCKNYNIQLRVPFRYFSNNTNPANNDDSPEFIQDWRRLKKEYEDLCSKIMNASQNSIPLIGEFAIFSDTQLRNHPTIIKVICENKGLSDELPHLVYVSREKKQEHPHHHKAGAMNVLTRISGVMTNAPFILNVDCDMYVHNPKIVQHALCILLDSKGEKEVAFAQCIQQFYDGLKDDPFGNQLVAKFLYLGGGLAGIQGIFYVGTNCLHRRKVIYGLSPDHHIRNGKKHHDITDERKRIFGSSKRFLESAANALEGKTLASNDNIWKYVEAAKEVGSSEYDYGTAWGKQVGWMYGSTSEDALTGLKIHTQGWRSETCSPELTPFMGCSPQDIISVMSQQKRWASGLLEILLSKHCPIFGTLFGKLQFRQCLGYLWVLTWPVRSLPELCYTLLPAYCIINNYTFLPKELGQWIVVTMFVIYNIATFVEYLRTGMSIRTWWNSERMGRITTTTAWFFGFLHIMLKLFGISDSVFEITKKEQSSMNEGAKENNGRFTFNNSSIFVPGTTILLIQLTALVTKLLGWEAPVRNGHGSGIGELFCCSYLVVCYWPFFKGLFGKGKYGIPFSTICKSVLLTLLFLYFCRAYE 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00865 743 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 381 IPR029044 -
Vimu4g00865 743 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 551 IPR029044 -
Vimu4g00865 743 Pfam Cellulose synthase 395 735 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu4g00865 743 Pfam Cellulose synthase 95 385 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu4g00865 743 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 8 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00865 Vimu-Chr4 6938200 6945377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00865 8 738 Glycosyltransferase AT2G32530 45.960 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00865 - - var:108332895 1447.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00865 4 6938200 6945377 Vimu4g00865 4 6938200 6945377 ECH
Vimu4g00865 4 6938200 6945377 Vimu5g01639 5 27951880 27958143 PCT