Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01635 GTGCAGGAGGTTCCAGCAGTGGATATGTTTGTGACAACAGCAGACCCTGTGCTTGAACCACCTATTATCACAGTGAACACAGTATTGTCTCTGTTAGCACTTGATTATCCACATCACAAGCTTGCTTGTTATGTCTCTGACGATGGTTGTTCACCCCTAACCTTCTACGCTCTTCAAGAAGCCTCCAAATTTGCAAAGTTTTGGGTACCATTCTGTAAGAAGTATGATGTGCAAGTTAGAGCTCCCTTCAGATACTTTTCTGCCAAACCAGAAGTCTCAACAGCCAGCAACACAACAGAATTCAAACAAGAATGGTTACAGATGAAATTCATACATGAAATGTACAGAAAACAGTTGCTTACTATTTCTGTTATATGGTTTTTATCAAACCATCTTTATAGGAATAAGAAAATACATATTTTAACAAAACATTACACACAATATTCTGAATTTTTTAAGGTTATATGGGAGAACAAGGAATGTCTTGCAGATGGATTGCCACATTTGATATACATATCTAGAGAGAAAAGGCCAAAACAGTCACATCATTTCAAAGCTGGTGCAATGAATGTGTTGACAAGAGTCTCTGGGTTGATGAGGAATGCTCCATTTATCTTGAACGTGGACTGTGACATGATTGTAAACAATCCAAAGGTTGTTCTGCATGCCTTGTGCATTTTGCTTGATTCCAAAGGAGAAAAAGAAGTTGCATTTGCTCAATTTCCTCAACAGTTCTATGCTACATTGAAGGACGATCCTTTCGGAAATCAGATGGCAATTCTTATTAAGTACTTGACTGCTGGAATAGCTGGGTTACAAGGACCTTTCTACAGTGGAACAAACTGCTTCCATACAAGAAAAGTTATTTATGGCCTTTATCCAGATAGCATGGAAAAGGGTATTTTTTTTTATTTTATTTTAATTTTTTGA 930 0.372 VQEVPAVDMFVTTADPVLEPPIITVNTVLSLLALDYPHHKLACYVSDDGCSPLTFYALQEASKFAKFWVPFCKKYDVQVRAPFRYFSAKPEVSTASNTTEFKQEWLQMKFIHEMYRKQLLTISVIWFLSNHLYRNKKIHILTKHYTQYSEFFKVIWENKECLADGLPHLIYISREKRPKQSHHFKAGAMNVLTRVSGLMRNAPFILNVDCDMIVNNPKVVLHALCILLDSKGEKEVAFAQFPQQFYATLKDDPFGNQMAILIKYLTAGIAGLQGPFYSGTNCFHTRKVIYGLYPDSMEKGIFFYFILIF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01635 309 Pfam Cellulose synthase 7 298 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu5g01635 309 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 289 IPR029044 -
Vimu5g01635 309 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 297 - -
Vimu5g01635 309 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 119 295 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01635 Vimu-Chr5 27928868 27937165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01635 1 297 Glycosyltransferase AT2G32540 53.642 5.54e-103 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01635 - - gmx:100500469 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01635 5 27928868 27937165 Vimu5g01635 5 27928868 27937165 ECH
Vimu4g00866 4 6951717 6955190 Vimu5g01635 5 27928868 27937165 PCT