Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00866 ATGGCCAACCAAGAACATGATCTCCCTCTCTATGAAAAAGTTTGGCTCAAACGAACATTTCAAAGAGTGATAGACACCTTGATTTTATTCCTCCTCCTCCTACTTCTTAGTAATCGAGTTTTCTCATCCCACAACTTCACTTTCCCATGGTTAGTTGCTTTGATATGCGAATCCTGGTTCACCTTCACTTGGATTGTCATTCTCAACACCAAGTGGAGTCCTGCAGTGACCATAACCCACCCAGATCGTCTCTTGCAAAGGGTTCAAGAGCTTCCACCAGTGGACTTGTTTGTTACAACAGCAGACCCTGTACTTGAATCCCCTATCATCACAGTCAACACTGTTTTATCTCTTCTAGCTCTTGATTATCCAGCTAACAAGCTAGCTTGCTATGTTTCTGATGATGGCTGCTCCCCTCTTACTTTCTATGCCCTTCTGGAAGCCTCCAAATTTGCTAAGTTTTGGGTTCCTTTCTGTAAGAAGCATAACGTACAAGTGAGAGCACCCTTTAGATACTTCTCTGATGTTACCATAAACAATAACGAAGACTCACTTGAATTCAAACAAGAATGGTTACAAGTGAAGGAGATGTACGACAATCTAGGCCGAACAATTGAAGAGGTGACACACAAAACAACTCCATTCCAACTTGATGGAGAACTTGCGGTTTTCTCGAATACAGAACAAAGAAATCATCCAAGCATAGTTAAGGTTATATTAGAAAACAAGGAAGGACTTTCTGATGGATTGCCTCACTTAATCTATGTATCAAGAGAGAAGAGACCACAGTATCATCATAATTACAAAGCGGGAGCTATGAATGTCTTGACAAGAGTGTCTGGATTGATGAGCAATGCTCCCTTTATGTTGAACGTAGACTGTGACATGGTTGTGAACAATCCCAAGATTGTTCTACACGCTCTGTGCATTTTGATGGATTCACAAAAAGGGAAAGACGTTGCTTTCGTTCAATGTTTCCAACAATTCTACGATGGAATAAAAGATGACCCTTTTGGAAATCAATGGGTGGCTTCATTTGAGTACATAATACGAGGCATGGCTGGACTTCAAGGACCTTTCTATGGAGGAACAAACACCTTCCATAGAAGAAACGCTATTTACGGTCTCTATCCTCATGAAATCGAAACCGAGATAAAAGGAAAATTAGAAGAAGATATACTAATACAACAATTTGGAAGCTCAAAGGAGTTCATCAATTCAGCAGCCCATGCTTCGGGAGGGAGTGTATATTCAGCTAATGACATTACTCCTTCCAACTTTATTGAGGCAGCAACCCAAGTTGCGAATTGTGACTATGAATGTGGCACTTTCTGGGGTAAAAAGTTGGGCTGGTTGTATGGATCAATCTCAGAAGATGTACCAACAGGGTTGAATATTCAAAGAAAAGGTTGGAGATCGGAGTGTTGCACCCCAGATCCAATTGCCTTTCAAGGATGTGCTCCTAGAGGATTACTCTCTACAGTTATACAACAAAAGAGATGGGGTTCAGGCCTAACAGTAGTCTTTTTTGGGAAGCATTCTCCTCTTGTTTGCATGCTCTTTGGTAAGGTCCAATTCAGGGCAGGCTTGTCTTATTTTTGGCTTACCAACTGGGGCTTACGTGGTGCATTCCTGGTTTGTTATGTTGCTCTAATTGCATATTGCATGATTGCCAACACCAGTATCTTTCCTGAGGGACTTGTCCTTTGGACTGCAATTTCTGTTTTTGTGATTTACAATATACATACTCTATCAGAGTACCTCACAATTGGGTTATCTATAACACATTGGTGGAACAATCAAAGAATGTGTGTGATGAGAACCACGACTGCATGGTTTATTGGATTCTTGAGTGCTATGCTTAAGCTATCAAGGATTTCAGATACTGTGTTTGAAATAACAGAGAAGGAACACACTGCTTCTGGTGCTGATGGAAACAATGCAGATGCTGGAAGGTTCACGTTCGATGAGTCCCCAGTTTTTGTGGTAGGCAGCACCATTTTGTTGGTGCATTTGACAGCCATGTTGGTAATGTTTTTGGGGTTGCAACCAGCTCCTATTGGAAATGGGTGTGGAGTAGGGGAGTTGATTTGTAGTACATATCTGGTAGTGTGCTACTGGCCATATTTGAAAGGGTTGTTTAGCAGAGGAAAATATGGAATTCCTGTATCCACCATTTGCATGTCATCCGTGTTTGCATTAGTCTTTCTGCATATTTGTAGAAGTAATATTATCACTTGA 2241 0.4114 MANQEHDLPLYEKVWLKRTFQRVIDTLILFLLLLLLSNRVFSSHNFTFPWLVALICESWFTFTWIVILNTKWSPAVTITHPDRLLQRVQELPPVDLFVTTADPVLESPIITVNTVLSLLALDYPANKLACYVSDDGCSPLTFYALLEASKFAKFWVPFCKKHNVQVRAPFRYFSDVTINNNEDSLEFKQEWLQVKEMYDNLGRTIEEVTHKTTPFQLDGELAVFSNTEQRNHPSIVKVILENKEGLSDGLPHLIYVSREKRPQYHHNYKAGAMNVLTRVSGLMSNAPFMLNVDCDMVVNNPKIVLHALCILMDSQKGKDVAFVQCFQQFYDGIKDDPFGNQWVASFEYIIRGMAGLQGPFYGGTNTFHRRNAIYGLYPHEIETEIKGKLEEDILIQQFGSSKEFINSAAHASGGSVYSANDITPSNFIEAATQVANCDYECGTFWGKKLGWLYGSISEDVPTGLNIQRKGWRSECCTPDPIAFQGCAPRGLLSTVIQQKRWGSGLTVVFFGKHSPLVCMLFGKVQFRAGLSYFWLTNWGLRGAFLVCYVALIAYCMIANTSIFPEGLVLWTAISVFVIYNIHTLSEYLTIGLSITHWWNNQRMCVMRTTTAWFIGFLSAMLKLSRISDTVFEITEKEHTASGADGNNADAGRFTFDESPVFVVGSTILLVHLTAMLVMFLGLQPAPIGNGCGVGELICSTYLVVCYWPYLKGLFSRGKYGIPVSTICMSSVFALVFLHICRSNIIT 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00866 746 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 387 IPR029044 -
Vimu4g00866 746 Pfam Cellulose synthase 94 382 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu4g00866 746 Pfam Cellulose synthase 386 739 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu4g00866 746 FunFam Cellulose synthase-like protein H1 223 382 - -
Vimu4g00866 746 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 9 726 - -
Vimu4g00866 746 SUPERFAMILY Nucleotide-diphospho-sugar transferases 108 508 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00866 Vimu-Chr4 6951717 6955190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00866 1 737 Glycosyltransferase AT2G32530 43.215 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00866 - - var:108332492 1408.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00866 4 6951717 6955190 Vimu4g00866 4 6951717 6955190 ECH
Vimu4g00866 4 6951717 6955190 Vimu5g01635 5 27928868 27937165 PCT