Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01605 ATGTTCATTTCAGCCAACGAAAATCCTTTCAAGGGAAACTTGACGAGTCTCCCCAAGCCGGGTGGCGGGGAGTTTGGAAAGTTCTACAGTCTTCCTTCTCTCAATGATCCCAGAATTGAAAGGTTACCATACTCCATCAGAATATTACTTGAATCTGCCATTCGTAACTGTGACAATTTTCAAGTAAAAAAGGAAGATGTAGAGAAGATTCTTGCCTGGGAAATAAACTCTACGAAGCAAGTTGAGATTCCTTTCAAGCCCGCTCGTGTTCTCTTGCAGGATTTTACTGGAGTGCCGGTTGTCGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATCAATCCTTTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTTACAAGGTCAGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCGTAATATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTAGGAAGGGTTGTATTCAACAATGAGGGCCTCCTCTATCCCGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGACGGGCTTGGTGTTGCTGGATGGGGAGTTGGAGGTATTGAAGCCGAGGCTGCAATGCTTGGTCAGCCTATGAGCATGGTTTTGCCTGGTGTTGTGGGGTTCAAGTTATATGGAAAACTGGGCAATGGTGTAACAGCAACAGACTTAGTTCTAACTGTGACTCAAATCCTCCGAAAGCATGGTGTTGTGGGGAAGTTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCTTTGGCTGATAGGGCCACTATTGCTAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACTTTGCAATATCTCAAGTTAACTGGAAGGAGTGACGAGAATGTGGCCATGATAGAGTCTTATCTCAGGGCAAACAAACTGTTTGTTGACTACAATGAGCCTCAACAAGACAGAGTATATACATCACATCTTGAATTAAACCTTTCCGAAGTTGAACCATGTATTTCAGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGGTTTGCAATACCAAAAGAGGCACAAGGAAACGTTGTAAAGTTTGATTTTCATGGGCAGCCAGCGGAGCTCAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCTAGTGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCTCGTGAACTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCTCCAGGTTCTGGAGTTGTCACAAAATATCTACACCAGAGTGGACTGCAAAAATATCTAAACGAACAAGGTTTTCATATAGTTGGATTTGGGTGTACTACATGTATTGGCAATTCAGGAGAGCTGGATGAATCCGTTTCTTCTGCCATCTCAGGGAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGAGTGCATCCGTTGACAAGAGCTAACTACCTTGCCTCTCCTCCTCTAGTTGTTGCTTATGCACTTGCTGGCACGGTTGACATTGATTTTGAGAAGGAGCCAATTGGGACAGGGGAGAATGGAAAGAATGTGTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCCGAGGCTGTCCAATCCAGCGTGTTGCCTGACATGTTCCGAAGCACATACGAGGCTGTTATCAAAGGGAACCCTATGTGGAATCAACTACAAGTTCCTGCTGACAGTCTCTACTCGTGGGACCCCAACTCAACATATATCCATGAACCTCCATACTTCAAGAACATGACCATGGATCCTCCAGGACCTCATGGTGTAAAAGATGCTTATTGTCTACTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCAGCTGGAAGCATTCACAAGGATAGTCCTGCTGCTAAATACCTTCTTGAGCGGGGTGTGGAACCCAAGGATTTTAATTCTTATGGAAGTCGTCGAGGAAATGATGAAGTGATGGCAAGGGGAACTTTTGCGAACATTCGCCTTGTTAACAAGCTCTTAAACGGGGATGTTGGCCCGAAGACAATTCATGTTCCAACTGGGGAGAAGCTCTATGTTTTTGAGGCAGCAACGGTTGTAACTCTAAATGCTCTGCCTACCGTGCATCAAACAAACTTTCCTCTTTTCTTCTCCCTTACCGGGTGCCGAAAGGCGCACCCCCTTTCTCGTTTGCTTCCATTCAGATACATGGCTTCTGGGCAAGACACCATTGTGCTGGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTACTGGGAGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTGGGAATGGGTATTATTCCTCTTTGCTTCAAATCCGGAGAGGATGCAGACACATTGGGATTAACTGGTCATGAACGTTATACAATTGACCTCCCAAGTAGAATCAGTGAGATTAGGCCTGGCCAAGATGTGACAGTCACAACTGATAATGGAAAATCTTTTACCTGCACCATACGCTTTGACACTGAGGTCGAACTTGCTTACTTCAACCACGGCGGCATCCTTCCATATGTCATAAGAAACCTCATCAAGGAGTGA 2814 0.4453 MFISANENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIERLPYSIRILLESAIRNCDNFQVKKEDVEKILAWEINSTKQVEIPFKPARVLLQDFTGVPVVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLYGKLGNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDENVAMIESYLRANKLFVDYNEPQQDRVYTSHLELNLSEVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGNVVKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKARELGLQVKPWVKTSLAPGSGVVTKYLHQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVSSAISGNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGENGKNVYLRDIWPSTEEIAEAVQSSVLPDMFRSTYEAVIKGNPMWNQLQVPADSLYSWDPNSTYIHEPPYFKNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVEPKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGDVGPKTIHVPTGEKLYVFEAATVVTLNALPTVHQTNFPLFFSLTGCRKAHPLSRLLPFRYMASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSRISEIRPGQDVTVTTDNGKSFTCTIRFDTEVELAYFNHGGILPYVIRNLIKE 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01605 937 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 5 934 IPR006249 -
Vimu5g01605 937 Gene3D - 600 661 - -
Vimu5g01605 937 FunFam Aconitate hydratase 8 375 - -
Vimu5g01605 937 ProSitePatterns Aconitase family signature 2. 502 515 IPR018136 -
Vimu5g01605 937 NCBIfam aconitate hydratase AcnA 26 765 IPR006249 -
Vimu5g01605 937 SUPERFAMILY LeuD/IlvD-like 640 765 - -
Vimu5g01605 937 Gene3D Aconitase, domain 4 664 775 IPR015928 -
Vimu5g01605 937 Gene3D Aconitase, domain 4 799 936 IPR015928 -
Vimu5g01605 937 FunFam cytoplasmic aconitate hydratase 376 599 - -
Vimu5g01605 937 FunFam Aconitate hydratase 799 936 - -
Vimu5g01605 937 SUPERFAMILY Aconitase iron-sulfur domain 22 636 IPR036008 -
Vimu5g01605 937 CDD AcnA_IRP 89 573 - -
Vimu5g01605 937 ProSitePatterns Aconitase family signature 1. 436 452 IPR018136 -
Vimu5g01605 937 Gene3D Aconitase, domain 3 376 599 IPR015931 -
Vimu5g01605 937 CDD AcnA_IRP_Swivel 677 883 IPR044137 -
Vimu5g01605 937 PRINTS Aconitase family signature 279 292 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 174 182 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 502 515 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 203 216 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 150 163 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 440 451 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 217 232 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 293 306 IPR001030 -
Vimu5g01605 937 PRINTS Aconitase family signature 375 389 IPR001030 -
Vimu5g01605 937 Pfam Aconitase family (aconitate hydratase) 68 571 IPR001030 -
Vimu5g01605 937 SUPERFAMILY LeuD/IlvD-like 800 935 - -
Vimu5g01605 937 Gene3D Aconitase, domain 3 7 375 IPR015931 -
Vimu5g01605 937 Pfam Aconitase C-terminal domain 801 863 IPR000573 -
Vimu5g01605 937 Pfam Aconitase C-terminal domain 700 765 IPR000573 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01605 Vimu-Chr5 27556817 27567335 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01605 K01681 - gmx:100793264 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00892 4 7277905 7286261 Vimu5g01605 5 27556817 27567335 PCT