Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00892 ATGGCTTCTGCAGCCTCTTCGCTCCTACGAGCTTCTCGCTCCGTGCTTGCTTCCTCTACCTCCAGTTCTGTTTATAGAGCCTTCTCTCGCTCCGCTCCTCGCCGATTACCCGGCTCCTCCGCCGCCGCGCGCTCCTTTGGCTCCGCCGTTCCGCGATGGAGCCACGGCGTCGATTGGCGCTCTCCACTCGGCCTCCGCCATCAGATCAGAGCCGTCGCTCCCCTCATCGAACGCTTCCACCGGAAGATCGCCACTAGTGCTCTTGATAATCCTTTCAAGGGAAATCTAACGAGTCTCCCTAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTTCCGTCTCTCAATGATCCGAGAATTGATAGGTTACCGTACTCTATCAGAATTCTCCTTGAATCAGCTATCCGCAATTGTGACAATTTCCAAGTTACTAAAGAAGATGTTGAGAAGATTATTGACTGGGAAAACTCTTGTGTGAAACAAGTTGAGATTCCTTTCAAGCCTGCTCGCGTTCTACTGCAGGATTTTACTGGAGTCCCTGCTGTTGTTGATCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCTAATGCTTTCCGTAACATGCTTGTTGTCCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGCGTTGTCTTCAACAATGAAGGCCTGCTTTATCCTGACAGTGTTGTTGGGACTGATTCACATACAACAATGATTGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGCGGTATTGAAGCAGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAGTTGCGGAATGGAGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATTCTTAGGAAACATGGTGTTGTGGGGAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAGCTATCATTAGCCGATAGGGCCACAATTGCGAATATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGATCACGTTACATTACAATACCTCAAGTTAACTGGAAGAAGTGATGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTATTGACTATAATGAGCCTCAACCAGATAGAGTTTATTCATCCTATCTTGAATTGAACCTTGATGAAGTCGAACCATGCATCTCAGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTAGACAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGATGTACAAGGAAAAGTTGCAAAATTTGATTTTCATGGGCAGCCAGCGGAGCTCAAGCATGGTAGTGTTGTGATTGCTGCAATCACAAGCTGTACGAATACATCAAACCCAAGTGTTATGCTAGGGGCTGGTCTCGTGGCAAAGAAGGCCCATGAACTTGGTTTGAAGATTGTAACTGTAGATGCTTTCACTGGTTGCCAGGTTAAGCCATGGGTAAAAACAAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAATATCTACTTCAGAGTGGCCTGCAAAAGTACCTAAATGAACAGGGTTTCAATATTGTTGGATTTGGCTGTACCACTTGTATTGGCAATTCTGGGGAACTAGACCCGTCAGTAGCTTCTGCTATTTCTGAAAATGACATAGTGGCTGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACAAGAGCTAACTACCTTGCGTCACCACCTCTAGTTGTTGCTTATGCTCTTGCTGGCACAGCTGTTCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAAGGTAACACTATGTGGAACCAACTCCAAGTTCCCACCGAGACCCTGTACTCATGGGACCCCAAGTCAACATACATTCATGAACCTCCATACTTCAAGGGCATGACCATGGATCCACCCGGAGCTCATGGTGTGAAAGATGCGTACTGTCTGCTGAATTTTGGTGACAGCATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCAGCTGCAAAATACCTTCTGGAGCGAGGGGTGGAACAAAAAGACTTCAATTCATATGGAAGTCGCCGTGGCAATGATGAAGTGATGGCGAGGGGAACTTTTGCAAACATTCGTCTTGTTAACAAACTCTTGAATGGGGAGGTTGGCCCCAAGACAGTTCACATTCCCACCGGGGAGAAGCTTTTTGTGTTTGATGCCGCGCAGAGATACAAGGCCGAAGGAAAGGACACCATTGTTCTGGCTGGAGCTGAGTATGGTAGTGGGAGTTCCAGAGATTGGGCCGCCAAGGGTCCCATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGTAGTAATTTGGTAGGAATGGGTATTATTCCTCTTTGCTTTAAATCTGGTGAGGACGCTGACACATTAGGATTGACCGGTCACGAGCGTTATACTATTGATCTCCCGAGTAAAATCAGCGAGATAAGGCCTGGCCAAGATGTCACCGTAACAACGGATACTGGAAAATCTTTCACTTGCACAGTTCGCTTCGACACAGAGGTGGAACTTGCTTACTTTAACCATGGGGGCATACTTCCGTATGTGATCAGGAACCTCACTAAGCAGTGA 2886 0.4636 MASAASSLLRASRSVLASSTSSSVYRAFSRSAPRRLPGSSAAARSFGSAVPRWSHGVDWRSPLGLRHQIRAVAPLIERFHRKIATSALDNPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENSCVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFIDYNEPQPDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKDVQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKIVTVDAFTGCQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGFGCTTCIGNSGELDPSVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTAVQSSVLPDMFRSTYEAITKGNTMWNQLQVPTETLYSWDPKSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLLERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLFVFDAAQRYKAEGKDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSKISEIRPGQDVTVTTDTGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLTKQ 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00892 961 PRINTS Aconitase family signature 595 608 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 375 388 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 299 314 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 285 298 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 256 264 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 457 471 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 361 374 IPR001030 -
Vimu4g00892 961 PRINTS Aconitase family signature 232 245 IPR001030 -
Vimu4g00892 961 Gene3D - 666 721 - -
Vimu4g00892 961 Gene3D Aconitase, domain 4 724 960 IPR015928 -
Vimu4g00892 961 FunFam Aconitate hydratase 90 457 - -
Vimu4g00892 961 ProSitePatterns Aconitase family signature 1. 518 534 IPR018136 -
Vimu4g00892 961 Gene3D Aconitase, domain 3 458 665 IPR015931 -
Vimu4g00892 961 CDD AcnA_IRP_Swivel 737 907 IPR044137 -
Vimu4g00892 961 ProSitePatterns Aconitase family signature 2. 595 608 IPR018136 -
Vimu4g00892 961 Gene3D Aconitase, domain 3 89 457 IPR015931 -
Vimu4g00892 961 SUPERFAMILY Aconitase iron-sulfur domain 104 696 IPR036008 -
Vimu4g00892 961 Pfam Aconitase family (aconitate hydratase) 150 664 IPR001030 -
Vimu4g00892 961 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 666 958 IPR006249 -
Vimu4g00892 961 CDD AcnA_IRP 171 665 - -
Vimu4g00892 961 Pfam Aconitase C-terminal domain 760 887 IPR000573 -
Vimu4g00892 961 FunFam Aconitate hydratase 723 960 - -
Vimu4g00892 961 FunFam cytoplasmic aconitate hydratase 458 672 - -
Vimu4g00892 961 SUPERFAMILY LeuD/IlvD-like 700 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00892 Vimu-Chr4 7277905 7286261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00892 K01681 - gmx:100810088 1768.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00892 4 7277905 7286261 Vimu4g00892 4 7277905 7286261 ECH
Vimu4g00892 4 7277905 7286261 Vimu5g01605 5 27556817 27567335 PCT
Vimu5g01607 5 27567845 27568691 Vimu4g00892 4 7277905 7286261 PCT