Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01586 ATGGCGACTCTTGATTCCGACGTGCCAATGATTCCGGCCGGCGAGGCATCGAGCAGCGCCGGACCGTCTTCCAAGAAACCCAAGCGCTTCGAGATCAAAAAATGGAACGCGGTCGCACTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCCATCTGCCGGAACCACATCATGGATCTATGCATCGAGTGCCAAGCCAACCAGGCCAGCGCAACTAGCGAAGAATGCACTGTGGCGTGGGGGGTTTGTAACCATGCTTTCCACTTCCACTGCATTAGTCGGTGGCTCAAGACTCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG 351 0.5413 MATLDSDVPMIPAGEASSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01586 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Vimu5g01586 116 PANTHER RING BOX 29 115 - -
Vimu5g01586 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Vimu5g01586 116 SUPERFAMILY RING/U-box 28 113 - -
Vimu5g01586 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Vimu5g01586 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Vimu5g01586 116 MobiDBLite consensus disorder prediction 1 28 - -
Vimu5g01586 116 FunFam E3 ubiquitin-protein ligase RBX1 17 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01586 Vimu-Chr5 27343963 27346548 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01586 K03868 - gmx:100789570 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00903 4 7443822 7449821 Vimu5g01586 5 27343963 27346548 PCT