Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00903 ATGGCTACTCTGGATTCTGACGTTACTATGGTTCCCGCTGGCGAACCCTCCAGCAGCACCGGTCCTTCTTCATCCAGCAAGAAGCCCAAGCGATTCGAGATCAAGAAGTGGAATGCGGTTGCTCTATGGGCATGGGATATCGTTGTGGACAATTGTGCTATCTGCAGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTCTGTCTGCCGGCGGCCGACCACCATGGCCGCCGACGGCCCCTCTTAAAAGTCTCTTCTTCATAATCTGGCCTAAATATAAGCTACACTTCAGAATTTGTCTCAGAATGGGATTTGAACCCATTCCCTTTCCCTTTTGGACCAGTAGCTCAAATTGGTACTTTAGCTCCTTTTTGGCATTCCCATTTGTTGTCATTCATATTCACGTTGAATCAAAGAGATCGGAAGTCTCTTATTCGAAGAACCAAAGAAAGGCCACTGCCTCTGCTGCTTACTCTACCGCTACCCGTTGCTGGTCTCTGTACGTCGCCGGCCACCGTCCGCCACCGTCCGCCGCCGTCCGCCGCCACTGTTCTGTCCGGCGACCAGCGGATCTGGATCGTCTCTTCGAGCGCGACCTAACCCCACCGGTGCTGGCGTCTGATTCTTCCCCATGCTCCGCCACGCGCCGCGTCTTTGTGCGCTGTGAACAGGCTTGTGCAGCTCACGCGCCGCCCTTTGGCCGCCGGAAAGTCACCGCGTCGCTTCCAATCGACTCGTCGGAGCCTCCTGAGCACGTCTACTTCTTTATCACCCTATTTGCGTCACTTAAGTACCTCCAACAAGCGTCATCCAACCATGGTTATCCTAGTGGCATTTTGGTTTCTTCTTCTCCTTGTATGCCACCACTGGTTTTCTTCTCCTTTGGACACTGCAACCTGTCTTTGGCATTTCAAGGGAAGCAACCCACTGTGATAACAAATTTGTGTTTTTGGATTTTGGGTATTTTTCTAGTTGGTTGTTGTTTGAGAATGCAGGGTGATGAAGGAAATTGGCTTAAAGGAATGGAGATTATGGAATTGAAGACTCATGATCTCTTGGTGAATGGAAGTGAAGATGGGATGAGAAAATTTCTTGTTGTTTGTTATTGCAGGACGTCAATCTCTTTTGTCGACTTCATTTATGTGTGTTTACCCAAACCAACTGTGATGCTTCCAATTCCAGTCAACAATTTCACTGTTTCCACCGTTCACAGTGAGGGGGAGTATGTTTCAAGACACTACAAGCAGAGTATGGCACTTTCAGCCACTACAGGCCCCATCACCCATCCATCTCAGAAATGGGGATTCAGTCCTTGCAGTTTGTCATTGTCCACTGCAAGCCAGATTTGTAGCTTTCAGCTACTACAGGCCCCATCAGTCTCAGAGATGGCAGTCCCTGCAGCCCCATCCTTACTTGATAAGGGATTTCGTCCTTGCAGATTGTCATTGTCCACCACTGCTCTCCGTCATCCACTTTTGAAGTTGAAGTTTCACAAGCAGCTATCAGTTATCACAACTTGGTATCAGAGCAGGTTTTCTGATCTTCTAACAGCTGTCTGCCGGCGGCCGACCACCATGGCTGCCGGCGGCCGACCACCATGGCCGTCGGCGGCCCCTCTTAAAAGTCTCTTCTTCATAATCTGGCCTAAATATAAGCTACACTTCAGAATTTGTCTCAGAATGGGATTTGAACCCATTCCCTTTCCCTTTTGGACCAGTAGCTCAAATTGGTACTTTAGCTCCTTTTTGGCATTCCCATTTGTTGTCATTCATATTCACGTTGAATCAAAGAGATCGGAAGTCTCTTATTCGAAGAACCAAAGAAAGGCCACTGCCTCTGCTGCTTACTCTACCGCTACCCGTTGTTGGTCTCTGTACGTCGCCGGCCACCGTCCGCCACCGTACGCCGCCGTCCGCCGCCACTGTTCTGTCCGGCGACCAGCGGATCTGGATCGTCTCTTCGAGCGCGACCTAACCCCACCGATGCTGGCGTCTGATTCTTCCCCATGCTCCGCCACGCGCCGCGTCTTTGTGCGCTGTGAACAGGCGTGTGCAGCTCACGCGCCGCCCTTTGGCCGCCGGAAAGTCACCGCGTCGCTTCCAATCGACTCGTCGGAGCCTCCTGAGCACGTCTACTTCTTTATCACCCTATTTGCGTCACTTAAGTACCTCCAACAAGCGTCATCCAAGTTCTGGCATTTTGGTTTCTTCTTCTCCTTGTATGCCACCACTGGTTTTCTTCTCCTTTGGACACTGCAACCTGTCTTTGGCATTTCAAGGGTGATGGAAGCAACCCACTGTGATAACAAATTTGTGTTTTTGGATTTTGGGTATTTTTCTAGTTGGTTGTTGTTTGAGAATGCAGGGCTTAAAGGAATGGAGATTATGGAATTGAAGACTCATGATCTCTTGGTGAATGGAAGTGAAGATGGGATGAGAAAATTTCTTGTTGTTTGTTATTGCAGGACGTCAATCTCTTTTGTCGACTTCATTTATGTGTGTTTACCCAAACCAACTGTGATGCTTCCAATTCCAATCAACAATTTCACTGTTTCCACCGTTCACAGTGAGGGGGAGTATGTTTCAAGACACTACAAGCAGAGTATGGCACTTTCAGCCACTACAGGCCCCATCACCCATCCATCTCAGAAATGGGGATTCAGTCCTTGCAGTTTGTCATTGTCCACTGCAAGCCAGATTTGTAGCTTTCAGCTACTACAGGCCCCATCAGTCTCAGAGATGGCAGTCCCTGCAGCCCCATCCTTACTTGATAAGGGATTTCGTCCTTGCAGATTGTCATTGTCCACCACTGCTCTCCGTCATCCACTTTTGAAGTTGAAGTTTCACAAGCAGCTATCAGTTGTTCGTTGA 2907 0.4933 MATLDSDVTMVPAGEPSSSTGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTLSAGGRPPWPPTAPLKSLFFIIWPKYKLHFRICLRMGFEPIPFPFWTSSSNWYFSSFLAFPFVVIHIHVESKRSEVSYSKNQRKATASAAYSTATRCWSLYVAGHRPPPSAAVRRHCSVRRPADLDRLFERDLTPPVLASDSSPCSATRRVFVRCEQACAAHAPPFGRRKVTASLPIDSSEPPEHVYFFITLFASLKYLQQASSNHGYPSGILVSSSPCMPPLVFFSFGHCNLSLAFQGKQPTVITNLCFWILGIFLVGCCLRMQGDEGNWLKGMEIMELKTHDLLVNGSEDGMRKFLVVCYCRTSISFVDFIYVCLPKPTVMLPIPVNNFTVSTVHSEGEYVSRHYKQSMALSATTGPITHPSQKWGFSPCSLSLSTASQICSFQLLQAPSVSEMAVPAAPSLLDKGFRPCRLSLSTTALRHPLLKLKFHKQLSVITTWYQSRFSDLLTAVCRRPTTMAAGGRPPWPSAAPLKSLFFIIWPKYKLHFRICLRMGFEPIPFPFWTSSSNWYFSSFLAFPFVVIHIHVESKRSEVSYSKNQRKATASAAYSTATRCWSLYVAGHRPPPYAAVRRHCSVRRPADLDRLFERDLTPPMLASDSSPCSATRRVFVRCEQACAAHAPPFGRRKVTASLPIDSSEPPEHVYFFITLFASLKYLQQASSKFWHFGFFFSLYATTGFLLLWTLQPVFGISRVMEATHCDNKFVFLDFGYFSSWLLFENAGLKGMEIMELKTHDLLVNGSEDGMRKFLVVCYCRTSISFVDFIYVCLPKPTVMLPIPINNFTVSTVHSEGEYVSRHYKQSMALSATTGPITHPSQKWGFSPCSLSLSTASQICSFQLLQAPSVSEMAVPAAPSLLDKGFRPCRLSLSTTALRHPLLKLKFHKQLSVVR 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00903 968 PANTHER RING BOX 31 82 - -
Vimu4g00903 968 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 32 68 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vimu4g00903 968 SUPERFAMILY RING/U-box 30 83 - -
Vimu4g00903 968 MobiDBLite consensus disorder prediction 1 28 - -
Vimu4g00903 968 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 84 IPR013083 -
Vimu4g00903 968 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00903 Vimu-Chr4 7443822 7449821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00903 K03868 - gmx:100526919 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00903 4 7443822 7449821 Vimu5g01586 5 27343963 27346548 PCT