Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01564 ATGATGTGTACGTTGGGAATGCAACACCAGCTTATCTCGCAAGCCACTTTCAAACACACTTTGGCTATAAAACCCTTCTTACTTCTCACTCTTTTCTCCACTCACTGCTCTCAGAACCTTCACTCTGCTCTCCCCATACTCTTCTGTTCTGCTTTAAGGATGTCTCACTCCTTAGGATTGTTTGTGGGTCTTATGTTGGTTGTGGGGGTGGCTTCCACCTCCAACTTCGATCAACTTTTTCAACCAAGTTGGGCTTTTGATCACTTCGTTCATGAAGGAGATCTCCTCAAACTCAAACTTGACAATTATTCTGGGGCTGGTTTTGCATCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTTGTGGAAGGTGATTCTGCTGGGACTGTCACTGCTTTCTATATGTCGTCGGAGGGGCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGCAACACCACAGGGGAACCATACTCAGTCCAAACAAACGTGTATGTGAACGGAGTGGGCAACAGAGAACAAAGGCTTAACCTTTGGTTCGACCCTACCAAGGATTTCCACTCATACTCTATCTTCTGGAATCAACGACAAGTTGTGTTTTTGGTGGATGAAACGCCGATTAGAGTGCACACAAACATGGAGCACAAGGGTATTCCTTATCCGAAAGACCAACCCATGGGTGTGTACAGTTCTATATGGAATGCTGACAATTGGGCCACCCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCTTTGCCACCTTCAAAAACTTTGAGATCAATGCTTGTGAATGCCCTGTGTCAGTGGCTGCAATGGATAACTCTAAACGCTGTAGCAGCAGTGAGGGTAAGAAGTATTGGTGGGATGAGCCAAATTTGGCTGAACTCAATGTGCACCAGAGCCATCAGCTGAAGTGGGTTAGGGCCAGACACATCTTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTCACGCCAGCTGAGTGTGTTCATCACCGTCACAACTGA 1032 0.4651 MMCTLGMQHQLISQATFKHTLAIKPFLLLTLFSTHCSQNLHSALPILFCSALRMSHSLGLFVGLMLVVGVASTSNFDQLFQPSWAFDHFVHEGDLLKLKLDNYSGAGFASKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADNWATQGGRVKTDWSHAPFFATFKNFEINACECPVSVAAMDNSKRCSSSEGKKYWWDEPNLAELNVHQSHQLKWVRARHIFYDYCSDTARFPVTPAECVHHRHN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01564 343 PRINTS Glycosyl hydrolase family 16 signature 106 124 IPR008264 GO:0004553|GO:0005975
Vimu5g01564 343 PRINTS Glycosyl hydrolase family 16 signature 164 177 IPR008264 GO:0004553|GO:0005975
Vimu5g01564 343 PRINTS Glycosyl hydrolase family 16 signature 182 199 IPR008264 GO:0004553|GO:0005975
Vimu5g01564 343 Gene3D - 64 343 - -
Vimu5g01564 343 CDD GH16_XET 71 337 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu5g01564 343 Pfam Glycosyl hydrolases family 16 79 254 IPR000757 GO:0004553|GO:0005975
Vimu5g01564 343 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 71 337 IPR044791 GO:0004553
Vimu5g01564 343 FunFam Xyloglucan endotransglucosylase/hydrolase 63 339 - -
Vimu5g01564 343 SUPERFAMILY Concanavalin A-like lectins/glucanases 76 341 IPR013320 -
Vimu5g01564 343 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 290 337 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu5g01564 343 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 74 262 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01564 Vimu-Chr5 27107017 27109157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01564 106 342 Glycoside Hydrolase AT4G03210 72.574 1.69e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01564 K08235 - gmx:100785982 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01564 5 27107017 27109157 Vimu4g00942 4 7816783 7818592 PCT