Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00942 ATGTCGAAGATGTTGGGACTGTTTGTTGGTTTTTTGTTTCTGGGGTTGGCTGCTTCTGTCAAGTTTGATGAACTCTTCCAACCCAGTTGGTCCATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGGTTTGGATCCAAGAGCAAGTACATGTTTGGGAAAGTGGCCATCCAACTCAAGCTTGTTGAGGGTGACTCTGCCGGAACCATGTCATCAGACGGTCCAACTCACAACGAATTTGATTTCGAGTTTCTGGGCAACACCAGTGGAGAACCATACTCGGTGCAAACGAACGTGTACGTGAACGGTGTTGGTAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTCGTGACTGTGTCTCCGTTGGGTCCCATCAATTTAGAAAAACAAACTCATGGTAAAAGCCAAAGCAGAAGGAATCTTATTACACAGATTCGAAGTGGATGGGACGCCGATAAGGGTGCATACAAATCTGGAACACAAGGGAATTCCGTTCCCAAAGGACCAACCCATGGGTATGACTGGGCCACACAGGGTGGTCGCGTGAAGACAGATTGGAGCCACGCACCCTTCTTTGTCACCTACAAGGACTTCCAAATCGACGCCTGCGAGTGTCCTGTGCCAGTCACATCAACTGCTTCTGCCAACAAATGTAACAGCAGTGAGGATAAGAAGTATTGGTGGGACGAACCCACACTGTCGGAACTGAACCTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTACTGCACCGACACTGCTAGGTTTCCGGTCACACCTGCCGAGTGTGTCCATCATCGTCACAACTGA 915 0.494 MSKMLGLFVGFLFLGLAASVKFDELFQPSWSMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVAIQLKLVEGDSAGTMSSDGPTHNEFDFEFLGNTSGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVVTVSPLGPINLEKQTHGKSQSRRNLITQIRSGWDADKGAYKSGTQGNSVPKGPTHGYDWATQGGRVKTDWSHAPFFVTYKDFQIDACECPVPVTSTASANKCNSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCTDTARFPVTPAECVHHRHN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00942 304 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
Vimu4g00942 304 PRINTS Glycosyl hydrolase family 16 signature 105 118 IPR008264 GO:0004553|GO:0005975
Vimu4g00942 304 PRINTS Glycosyl hydrolase family 16 signature 123 140 IPR008264 GO:0004553|GO:0005975
Vimu4g00942 304 Gene3D - 167 304 - -
Vimu4g00942 304 Gene3D - 14 149 - -
Vimu4g00942 304 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 298 IPR044791 GO:0004553
Vimu4g00942 304 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 302 IPR013320 -
Vimu4g00942 304 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 223 IPR000757 GO:0004553|GO:0005975
Vimu4g00942 304 Pfam Glycosyl hydrolases family 16 25 215 IPR000757 GO:0004553|GO:0005975
Vimu4g00942 304 PIRSF EndGlu_transf 3 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu4g00942 304 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 251 298 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00942 Vimu-Chr4 7816783 7818592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00942 52 303 Glycoside Hydrolase AT4G03210 61.390 3.75e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00942 K08235 - gmx:100801567 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01564 5 27107017 27109157 Vimu4g00942 4 7816783 7818592 PCT