Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00939 ATGGTGGTAACAGAAGCAAGAGTTGTGTCCTTTACAACCTCAGTGGCTTCGCACACTTCACGCTCTTTCATGCATCATCCACCATGCATCTTATCTTCGTTACAAACATCACCACCACATACTATGAAGCAAAACAAATTATCCATTAAATCGGTTGCTTTCCGCGACAAGGTGCCTATTCAAATTGATCCTGGGAAAAAAAAACTGGAGCAAGTTAAAAGAAGCAGCCAAGAGACATTGTTAAACTCAAGTGATCCAACAAAAACATTGAAGATAATTGACATCATTCAAAGGTTAGGAATTGGGCACCATTTTGAAGAAGAGATCAATGTAAAACTTGGAAAGATCTCTGTTCCACTGCTCTTCAATTTCGACTGCTCAGACATAATGGCTGCCATGTTTCTTCTGGTACACTCATCTGCAACACTGGGATATTCATATTCAAAATTTTTGGACCATAGTGGGAACTTCAAGGAATCAATTACCAGTGACATTTGGGGAATGTTAAGTATGTATGAGGCATCATATTTAGGTGCAAAGGGTGAAGAAGTGTTGCAACAGGCCATGGACTTCTCCAGTGCTCATCTGCAGCAATCACTCCCACTTCTAAGTCCTGATGTAGGGAATCATGTTGTCAGAGCCTTAAAACTTCCGAGACACCTAAGAATGAGTAGGTTGGAAGCCAGAAACTACATCGAAGAATATAGCCATGTGAGCAGCAAGATGCCATATCTTCTGGAAATGGCAAAGATAGACAATGCCATGGTTCAGTCAATGCACCAAAAAGAATTAGCAGATATCTCTAGGACTTGGGACTTGTTGAAAGCCTTGGTTTTGCAAGAGATAAACCAGGAGAAACCATGTTATTCAAATTGTCGCATTGAACTTGCAAAAACCATTTGTATTTTGCTAGTTATGGATGATATTTTCGACACTTACGGCACATTAGATGAACTCGTTCTTTTTACCGAGGCAATCAAAAGGTGGGATCTTGATGCTATGGAACAGTTGCCTGAATACATGAAGATAAGCTACTTGGCATTGTATAACACCACCCAAGAAATTGCATGTAGAATTCAAATGGAGCAAGGACAAACCGTTCTTTCTTGCTTGAAAAGAACTTGGATAGACATATTTGAAGCTTTTCTGAAAGAAGCCAAATGGTTCAGCAACAAATATGTGCCAACTTTTCAGGAATATTTGGCTAATGGGGTGATTTCTTCAGGGTCATACATGGCATTGGTGCATGCAACTTTTCTTATTGGGGATGGTATCTCAAAGGAAACCATTTCCACGATGAACCCTTATCCAAGACTTTTCTCATGTTCAGGGGAAATTCTTAGGCTTTGGGATGACTTAGGAACTTCAAGGGAGGAGCAAGAAAGAGGAGACAATGCTTGCAGCTTACAGTGTTTGATGACAGACAATAATATTTCTGATGAAAATGTTGCAAGAAAAGAAATAAGAGGATTTATCAGGAACTTATGGCCAGAGTTAAATAGTCTTGCTTTGACCACAACCTCTTTGCCTTTTTCAGTTATAAAGGCTTCTCTAAACATGGCTAGAACTTCTCAGGTAATTTATCAGAATGGAGATGATCAGAACACATTCACAGTTGATGATTATGTCCAAACATTGCTCTTTACACCAGCTCTCAACTATTGA 1665 0.3946 MVVTEARVVSFTTSVASHTSRSFMHHPPCILSSLQTSPPHTMKQNKLSIKSVAFRDKVPIQIDPGKKKLEQVKRSSQETLLNSSDPTKTLKIIDIIQRLGIGHHFEEEINVKLGKISVPLLFNFDCSDIMAAMFLLVHSSATLGYSYSKFLDHSGNFKESITSDIWGMLSMYEASYLGAKGEEVLQQAMDFSSAHLQQSLPLLSPDVGNHVVRALKLPRHLRMSRLEARNYIEEYSHVSSKMPYLLEMAKIDNAMVQSMHQKELADISRTWDLLKALVLQEINQEKPCYSNCRIELAKTICILLVMDDIFDTYGTLDELVLFTEAIKRWDLDAMEQLPEYMKISYLALYNTTQEIACRIQMEQGQTVLSCLKRTWIDIFEAFLKEAKWFSNKYVPTFQEYLANGVISSGSYMALVHATFLIGDGISKETISTMNPYPRLFSCSGEILRLWDDLGTSREEQERGDNACSLQCLMTDNNISDENVARKEIRGFIRNLWPELNSLALTTTSLPFSVIKASLNMARTSQVIYQNGDDQNTFTVDDYVQTLLFTPALNY 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00939 554 Pfam Terpene synthase family, metal binding domain 246 496 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu4g00939 554 Gene3D - 65 254 IPR036965 GO:0010333|GO:0016829
Vimu4g00939 554 Pfam Terpene synthase, N-terminal domain 67 215 IPR001906 GO:0010333|GO:0016829
Vimu4g00939 554 SFLD Isoprenoid Synthase Type I 244 550 - -
Vimu4g00939 554 PANTHER OS04G0344100 PROTEIN-RELATED 54 534 - -
Vimu4g00939 554 Gene3D Farnesyl Diphosphate Synthase 256 553 IPR008949 -
Vimu4g00939 554 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 69 237 IPR008930 -
Vimu4g00939 554 SFLD Terpene Cyclase Like 1 C Terminal Domain 244 550 IPR034741 -
Vimu4g00939 554 SUPERFAMILY Terpenoid synthases 243 550 IPR008949 -
Vimu4g00939 554 CDD Terpene_cyclase_plant_C1 67 550 IPR044814 GO:0010333|GO:0016102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00939 Vimu-Chr4 7738243 7742395 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00939 - - vum:124845966 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00939 4 7738243 7742395 Vimu4g00939 4 7738243 7742395 ECH
Vimu4g00939 4 7738243 7742395 Vimu5g01560 5 27051648 27056454 PCT