Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01543 ATGCCTGAGGCTCCTAGCCACTACCTGTGCAATAACAAGCCAAATGGCAAAGTTGATGTTGCTACTGATAATAGTAGCATCACCGAGAGCAGTAACAATAAAGCTCTGAAATACATTGAGGATGTCACTAGCAACGCTGATGAAATTCAGAAGAGGGTCCTTGCTGAGATCCTTTCCTCCAGTGCACATGCTGAGTACCTTCAACGCCATGGCTTAGATGGGCGCACAGACAGAGACACTTTCAAGAACATCATGCCTGTTGTCACATACGAGGATTTAAAGCCAGATATTGATCGTATAGCTAATGGTGATACCTCGTCAATTTTATGTTCCAAACCTATTTCTGAGTTCCTCACTAGCTCTGGAACATCTGGTGGGGAGAGAAAGCTGATGCCAACGATAGAAGATGAACTTGAGAGAAGATCATTACTGTACAGCCTCTTGATGCCAGTGATGGATCAATTTGTTCCAGGTTTAGAGAAAGGCAAGGGTATGTACTTTCTGTTCGTGAAATCTGAAGCCAAAACCCCAGGGGGGCTCCTAGCTCGTCCAGTTTTAACCAGTTACTACAAGAGTTCACATTTCAAAAACTCTAAACAAAGATACGATCCCTACACAAACTACACCAGCCCCATTGAGTCCATTCTCTGCCTCGACTCTTACCAAAGCATGTATTCTCAGATGCTTTGTGGACTTTCACAAAACGAACAAGTTCTTCGTGTTGGGGCAGTTTTCGCCTCAGGTTTCATCCGTGCCATCAAGTTCCTAGAAAAGCATTGGGTCAGTTTGTGCCGTGACATAAGAAATGGAACCCTAGACCGTGAAATCACTGACTCATCTTTGAGAGACGCCATCTTGAAGATACTCAAACCAAACCCCAAGCTTGCGGATTTCATAGAAGCTGAGTGCAAGAAGGAGTCTTGGAAGGGGATCATCACTAGGGTCTGGCCAAACACCAAGTATGTTGATGTTATTGTTACAGGAACCATGTCTCAGTATATTCCAATATTGGATTACTACAGCAATGGTCTCCCTCTCGTCTGCACCATGTATGCTTCGTCTGAGTGTTACTTCGGCCTCAATTTGAACCCTTTGTGTGAACCCAGTGAGGTTTCTTACACCCTCATTCCCACAATGGCCTACTTTGAGTTCTTGCCACTCGAAAAAACCAAGGGACATGCCAATATTTCTATTTCTCACCCAGACCAGGAACTTTTGGTTGATCTTGTGGATGTAGAGATGGGTCAAGAATACGAGCTTGTGGTCACCACTTATGCGGGACTTTACCGGTACAGGGTTGGTGACATACTCCGTGTAGCGGGATTCAAGAACAAGGCACCTCAATTCAACTTCGTGTGCCGAAAGAATGTGGTTTTGAGCATTGATTCTGACAAGACGGATGAAGTTGAGCTGCAAAATGCTGTGAAGCATGGAGCAAACCGTCTTGCAGAGTTCGGTGCATCACTGACAGAGTACACAAGCTGTGCTGACACGTCGACGATCCCAGGTCACTATGTTCTGTACTGGGAGATTAGCAGGAATGATGAGAGCCCAATTCCAGGTTCTGTTTTTGAGGAGTGTTGCTTTACAGTTGAAGGGTGTCTGAACAGTGTTTATAGACAAGGAAGGGTATCAGAATCCATTGGAGCATTGGAAATCAAGATTGTGGAGAATGGAACCTTTGATAAGCTTATGGACTTTGCTCTGAGCCAGGGTGCGTCCATAAATCAGTACAAGACACCTCGCTGTGTGAAATATGCTCCCATCGTTGAACTTCTGGATTCCAAGACAATTTCCAGTTACTTCAGTACAAAATATCCACACTGGGTCCCTGGTCACAAGAAATGGTGCATGTTCCCTTGA 1863 0.4493 MPEAPSHYLCNNKPNGKVDVATDNSSITESSNNKALKYIEDVTSNADEIQKRVLAEILSSSAHAEYLQRHGLDGRTDRDTFKNIMPVVTYEDLKPDIDRIANGDTSSILCSKPISEFLTSSGTSGGERKLMPTIEDELERRSLLYSLLMPVMDQFVPGLEKGKGMYFLFVKSEAKTPGGLLARPVLTSYYKSSHFKNSKQRYDPYTNYTSPIESILCLDSYQSMYSQMLCGLSQNEQVLRVGAVFASGFIRAIKFLEKHWVSLCRDIRNGTLDREITDSSLRDAILKILKPNPKLADFIEAECKKESWKGIITRVWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCEPSEVSYTLIPTMAYFEFLPLEKTKGHANISISHPDQELLVDLVDVEMGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKHGANRLAEFGASLTEYTSCADTSTIPGHYVLYWEISRNDESPIPGSVFEECCFTVEGCLNSVYRQGRVSESIGALEIKIVENGTFDKLMDFALSQGASINQYKTPRCVKYAPIVELLDSKTISSYFSTKYPHWVPGHKKWCMFP 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01543 620 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 32 606 IPR004993 -
Vimu5g01543 620 Pfam GH3 auxin-responsive promoter 39 585 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01543 Vimu-Chr5 26853749 26857637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01543 25 604 EF-hand Containing Proteins AT1G23160 49.153 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01543 K14487 - gmx:100819676 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01543 5 26853749 26857637 Vimu5g01543 5 26853749 26857637 ECH
Vimu4g00945 4 7845151 7849358 Vimu5g01543 5 26853749 26857637 PCT