Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00945 ATGTTTGGTGCCACACTCGAAAAGTCGATAGCCATTGATTCTGCAGCCATGCCAGAGGCTCCAAAGCACTTGTGCCACGAGGCAAAGGAGCTTGATGATGGTGGCAGTAACAGTAGTATGATCCAGGAGAATAAGAGAGCCCTGGAATACATTGAAGAGGTCACCAGAAACGCTGATGAAATTCAAGAAAAGGTGCTTGCTGAGATCCTTTGTTGTAGTGCAGAAGCTGAGTACCTCCAACGCCATGGCCTGGATGCTCGCACTGACAGAATCACTTTCAAAAAGCTCGTCCCAGTGGTCACTTACGAGGATTTAAAGCCTCATATTGATCGCATAGCCAACGGTGATACCTCCCCAATTTTATGTTCCAAACCCATCTCAGAATTCCTCACTAGCTCTGGAACGTCTGGTGGGGAGAGAAAACTGATGCCTACGATCGAAGAAGAACAAGAGAGAAGATCATTGCTTTATAGCTTGTTGATGCCAGTGATGGATCAGTTTGTGCCTGGTTTGGAGAAAGGAAAAGGCATGTACTTTCTGTTCACAAAATCAGAAGCTAAAACTCCCGGTGGGCTCCTTGCTCGTCCAGTTCTCACCAGCTATTACAAAAGCTCACAGTTCAAGAACTGCAAATATGATCCCTACACAAACTACACCAGCCCCAATGAAACCATTCTCTGTCCTCACTCTTTCCAAAGCATGTACTCTCAGTTGCTCTGTGGCCTTTGCCAAAACGAGGAAGTTCTTCGCGTTGGGGCAGTCTTCGCTTCCGGTTTCATCCGTGCCCTTAAGTTCCTCGAAAAGCACTTCCTTTGTCTCTGCAATGACATAAGAACGGGCACCCTCGACGCCAAAATCACTGACCCCTCTGTTAGAGAAGCTGTGATGAAATTCCTGAAACCAAATCCCACGCTTGCGGATTTCATTGAAGCCGAATGCTTGAAGGGGTCGTGGAAGGGAATCATTACCAGGATATGGCCTAACACCAAGTATGTTGATGTTATTGTCACGGGAACCATGTCTCAGTATATTCCCATATTGGATTATTATAGCAATGGTCTTCCTCTTGTGTGCACCATGTACGCTTCTTCTGAGTGCTACTTTGGCCTCAATTTGAACCCCTTGTGTGATCCAAGTGAGGTGTCTTACACACTCATTCCCACCATGGCCTACTTTGAATTCTTGCCCGTCTATCAGATCAATGGACATACTGATTCCATTTCTAACCTAGATCATGAACATCTGGTAGATCTTGTTGATGTGAAGTTGAATCAAGAGTACGAGCTTGTGGTCACCACTTACGCAGGACTTTATAGGTACCGGGTTGGCGACATCCTCCGTGTAGCTGGATTCAAGAACAAGGCTCCTCAGTTCAACTTCGTGTGTCGAAAGAACGTGGTTCTCAGCATTGATTCTGATAAAACCGACGAAGTTGAGCTCCACAATGCTGTCAAAAATGGTGCCGATTATCTTCCAGAATTCGGTGCATCTCTCACTGAATACACCAGTTGCGTGGACACGTCAACAATCCCAGGCCATTACGTTGTCTATTGGGAAATCAACAGAAAGGGGGGGCAAATCCCAGAAATTCCATCTTGTGTTTTTTGTGATTGTTGCCTGGCAATTGAAGAATCTCTGAACAGCGTGTATCGGCAGGGAAGGGTGTCGGAATGTATTGGAGCCTTGGAAATTAGGGTGGTTGAGAATGGGACGTTTGACAAACTCATGGACTTTGCTCTTAGCCAAGGTGCCTCCATAAACCAATACAAGACACCTCGTTGCGTCACTTATGTGCCCATTATCGACCTTCTTAACTCCAAAGTTGTTTCCAATTACTTCAGCCCCAAATGCCCAACTTGGGTCCCTGGTCACAAGAATTGGTTCACAGAAAATTAG 1896 0.4599 MFGATLEKSIAIDSAAMPEAPKHLCHEAKELDDGGSNSSMIQENKRALEYIEEVTRNADEIQEKVLAEILCCSAEAEYLQRHGLDARTDRITFKKLVPVVTYEDLKPHIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEEQERRSLLYSLLMPVMDQFVPGLEKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSSQFKNCKYDPYTNYTSPNETILCPHSFQSMYSQLLCGLCQNEEVLRVGAVFASGFIRALKFLEKHFLCLCNDIRTGTLDAKITDPSVREAVMKFLKPNPTLADFIEAECLKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPVYQINGHTDSISNLDHEHLVDLVDVKLNQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELHNAVKNGADYLPEFGASLTEYTSCVDTSTIPGHYVVYWEINRKGGQIPEIPSCVFCDCCLAIEESLNSVYRQGRVSECIGALEIRVVENGTFDKLMDFALSQGASINQYKTPRCVTYVPIIDLLNSKVVSNYFSPKCPTWVPGHKNWFTEN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00945 631 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 43 617 IPR004993 -
Vimu4g00945 631 Pfam GH3 auxin-responsive promoter 51 596 IPR004993 -
Vimu4g00945 631 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00945 Vimu-Chr4 7845151 7849358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00945 38 614 EF-hand Containing Proteins AT1G23160 49.231 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00945 K14487 - gmx:100818961 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00945 4 7845151 7849358 Vimu4g00945 4 7845151 7849358 ECH
Vimu4g00945 4 7845151 7849358 Vimu5g01543 5 26853749 26857637 PCT