Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01514 ATGGCCACTGTTACTTCTTCCTTCCATTTCTCCACTCTCACTCAATCTTCTCAGAGGAACTTCACCCTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTGGTTTCTCATGCCACTATCTTGGAGTTCGAGCTTCCAGTTATGCTTCCAAAATGGTTGTTCGCTGCTCCTCTTCCTCTGTCACAGAACCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGAATATAAGCGACCAATTCCAAGTATCTACAACACGGTGCTGCAAGAGCTCATTGTTCAGCAACATTTAATGAGATACAAGAGATCATATCGCTATGACGCTGTATTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCGATCTTCCAAGCATACATTAAGGCACTGAAAGAAGATCCTGAACAATACAGAGTTGATGCAAAGAAATTGGAAGAATGGGCTCGAGCTCAAAACTCAACTTCACTAATTGAGTTCTCATCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTCGCAATAGGCCTCTTTCGCCTTCTTGAATTAGCAAATGCTATGGAACCAACAATTTTGGAAAAGCTTTGTGCGGTTTTGAATGTCAACAAAAGAAGCGTGGATCGGGATTTGGATGTGTATCGTAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGTTGCTAAAGGAATATGTTGACAGGTAA 792 0.4217 MATVTSSFHFSTLTQSSQRNFTLSSNSPTFRFRVGFSCHYLGVRASSYASKMVVRCSSSSVTEPPTVSETKLNFLKEYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIKALKEDPEQYRVDAKKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01514 263 Pfam Thylakoid formation protein 66 262 IPR017499 GO:0010207|GO:0015979
Vimu5g01514 263 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 263 IPR017499 GO:0010207|GO:0015979
Vimu5g01514 263 NCBIfam photosystem II biogenesis protein Psp29 62 261 IPR017499 GO:0010207|GO:0015979
Vimu5g01514 263 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01514 Vimu-Chr5 26353612 26357373 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01514 - - gmx:100779964 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01514 5 26353612 26357373 Vimu5g01514 5 26353612 26357373 ECH
Vimu4g00988 4 8310771 8312900 Vimu5g01514 5 26353612 26357373 PCT