Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00988 ATGGCGGCTCTCACTTCTCTCTCTTTCTCTGCAGTCACTCACTGCCCAGAAAGAAAAAAACTAACCTTTTCCTCCGCTCCTTTTCTCGCCAACTCTTCAGACTTCTTTGGCCTCCGCACTCATTTCTCCTACCACCATGTTGGCGTTCGAGCTTCCAACTCCACTTCTAACATGGTTGTTCAATGCATGTCCTCTGTCACAGGTTCTTGTCTTTCTTTTGAACTTGCTTTGTGTGGTTATGTGTGTTATGCTCCCACCGTTTCGGAGACAAAGTTGAATTTCCTGAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACAGTGCTGCAGGAGCTTATTGTGCAGCAACATTTAATGAGATACAAGAGATCATACCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTGTATGATAAACTCATGGAAGGGTATCCTAGTGACGAGGACCGAGATGCCATCTTTCAAGCCTACATTAAGGCGTTGAAGGAAGATCCACAAGAATACAGAATAGGTGCAAGGAAGTTGGAAGAGTGGGCTCGGGTTCAAAACCCAAGTTCCCTTCTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGGATTCTAAAGGAAATAGCAGAAAGAGCAGCGGGGAAAGGTGAATTCAGTTATAATCGTTTCTTTGCAGTTGGACTTTTTCGTCTGCTTGAGTTGGCAAATGCTACGGATCCAACAATTTTGGACAAGCTTTGTGCGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAACCTGCTCTCAAAGTTGGTTCAAGCAAAAGAGCTGCTGAAGGAGTATGTTGACAGGGAAAAGAAGAAAAGGGATGAAAGGGCTGAACCACAAAAGGCTAATGAGGCTATCACAACATGTTTGGGTGAACAACTTCCAGGCCTGTAG 939 0.4441 MAALTSLSFSAVTHCPERKKLTFSSAPFLANSSDFFGLRTHFSYHHVGVRASNSTSNMVVQCMSSVTGSCLSFELALCGYVCYAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKEDPQEYRIGARKLEEWARVQNPSSLLEFSSKEGEVEGILKEIAERAAGKGEFSYNRFFAVGLFRLLELANATDPTILDKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAEPQKANEAITTCLGEQLPGL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00988 312 Pfam Thylakoid formation protein 86 291 IPR017499 GO:0010207|GO:0015979
Vimu4g00988 312 NCBIfam photosystem II biogenesis protein Psp29 85 288 IPR017499 GO:0010207|GO:0015979
Vimu4g00988 312 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 308 IPR017499 GO:0010207|GO:0015979
Vimu4g00988 312 Coils Coil 263 293 - -
Vimu4g00988 312 Hamap Protein Thf1 [thf1]. 81 289 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00988 Vimu-Chr4 8310771 8312900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00988 - - gmx:100814341 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00988 4 8310771 8312900 Vimu4g00988 4 8310771 8312900 ECH
Vimu4g00988 4 8310771 8312900 Vimu5g01514 5 26353612 26357373 PCT