Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01505 ATGAGGCGAAGGAGCGTAGATTTTCGAAGGCCAGGGAGGAGGAGGCTGCAGGATGTAGTGTGGTTCACATCGTGTATCGTTTTGCTTCTTTTCTTTATTTATATTCTCGCCAAAGGCTCCACCAAAATTGACTCCACTTACCAATTCTCAAGGAGAACTTTCAGGCGTGACAGGGTTATTGAAGGCTTCAATGTTACTGATGAGATGTTAAGCCCTGAGTCTGTGACCAGACAAATTAATGATCAAATCTCACTAGCAAAAGCTTTTGTTGTAATTGCCAAAGAAAGTAACAACCACCAATTTGCTTGGGAGTTAACTTCTCAGATCCGCATTTCACAGATTTTTCTCTCGAATGCTGCCACGAGACGTACTCCATTAACAATCAAGGAATCAGAATATGCAATTCGTGATATGGCCTTATTACTGTTTCAGGCCCAGCAGCTCCATTATGACAGTGCTAGCATGATCATGAGACTGAAAGGAAAAATTCAAGCTCTTGAAGAACAGATGAGTTCTGCAAGTGAGAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGAGCCTATATTGCCTTGGTGTCAGGTTGACATCTAAATGGTTCACGAATCTTAGCCTGCAGAAGAGTTTAAAGGACCAAATACAAGTGGACATTAAACTGAAGGATAATGATCTTTACCACTTCTGTGTCTTTTCTGATAACATCCTTGCTACCTCGGTTGTGATCAATTCCACTTCGATAAATTCCAAAAACCCAGATAAGATTGTTTTTCACCTTGTCACAGATGAAATAAATTATGCTGCAATGAAGGCATGGTTTTCTTTGAACGATTTTCGACGGGTGACAGTTGAAGTTCAAAGGTTTGAAGACTTCAGCTGGTTGAATGCCTCATACGTTCCTGTGCTTAAGCAGCTACAAGACTCAGAGATACAGAACTATTATTTCAAAGGCAACAATGATGACAACAAAACTCCCATCAAGTTCAGGAATCCGAAATATCTATCCATGCTTAACCACCTGAGGTTCTACATCCCTGAAGTTTTTCCCGAGCTGAAGAAAGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTACCATTGATTTGAACGGGAATGTCAACGGAGCCGTTGAGACATGCATGGAGACATTTCATAGATACCATAAATACTTGAACTACACACACCCTCTAATAAGAACACATTTTGACCCTGATGCTTGTGGGTGGGCATTTGGGATGAATGTGTTTGATTTGGTTCAATGGAGGAAAAGGAATGTGACAGGAATCTACCATTATTGGCAAGAAAAGAATGCAGACAGGACATTGTGGAAACTTGGTACCTTGCCACCTGGGTTGTTAACCTTCTATGGGCTTACCGAGCCCTTGGATCCATCATGGCATGTGCTGGGTTTTGGCTACACAAATGTTGATCCTCAGTTGATAGAAAGAGGGGCTGTTATACACTTCAATGGAAACTCCAAACCGTGGTTGAAGATTGGGATGGAAAGATACAAGCCTATGTGGGAAAAGTACGTGGATTATTCTCACCCATTATTGCAACAGTGTAATTTTCATTGA 1605 0.4118 MRRRSVDFRRPGRRRLQDVVWFTSCIVLLLFFIYILAKGSTKIDSTYQFSRRTFRRDRVIEGFNVTDEMLSPESVTRQINDQISLAKAFVVIAKESNNHQFAWELTSQIRISQIFLSNAATRRTPLTIKESEYAIRDMALLLFQAQQLHYDSASMIMRLKGKIQALEEQMSSASEKSSKYGQIAAEEVPKSLYCLGVRLTSKWFTNLSLQKSLKDQIQVDIKLKDNDLYHFCVFSDNILATSVVINSTSINSKNPDKIVFHLVTDEINYAAMKAWFSLNDFRRVTVEVQRFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNNDDNKTPIKFRNPKYLSMLNHLRFYIPEVFPELKKVVFLDDDVVVQKDLSDLFTIDLNGNVNGAVETCMETFHRYHKYLNYTHPLIRTHFDPDACGWAFGMNVFDLVQWRKRNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVIHFNGNSKPWLKIGMERYKPMWEKYVDYSHPLLQQCNFH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01505 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 532 IPR029044 -
Vimu5g01505 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 68 533 IPR029993 GO:0047262
Vimu5g01505 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 526 IPR029044 -
Vimu5g01505 534 Coils Coil 156 176 - -
Vimu5g01505 534 CDD GT8_like_1 229 522 - -
Vimu5g01505 534 Pfam Glycosyl transferase family 8 236 508 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01505 Vimu-Chr5 26259601 26262225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01505 1 534 Glycosyltransferase AT2G20810 76.350 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01505 K13648 - gmx:100792018 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01505 5 26259601 26262225 Vimu5g01505 5 26259601 26262225 ECH
Vimu4g01003 4 8427079 8430141 Vimu5g01505 5 26259601 26262225 PCT