Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01003 ATGCGACGAAGAGCGACAGATTTTCGCAGGCCAGTGCGTAGGAAGGTTCCAGATGCTTTGTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTCTATATTCTGAGCAAAGGGAACAAAATTGAGTCCAGACCCGCTTTGTCCAAGAGAACTTACAAGCATGATAAGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAACTCTAACTCAGTCACGAGACAACTCAATGATCAGATATCTCTGGCAAAAGCCTTTGTTGTAATTGCCAAAGAAAGTAACAATCTCCAATTTGCTTGGGAATTAAGTGCCCAGATCCACAATTCACAGAGGCTCCTCTCAAATGCTGCAACTAGGCGTGTTCCTTTGACAACAAGGGAAACAGAAAAGGCCATCCGTGATATGGCATTATTGTTATACCAAGCCCAGCAGCTCCATTATGATAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAGCTCTTGAGGAACAGATGAATTCAGTTACTGAAAAGAGTTCGAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGTTTGTACTGCCTTGGTGTTCGGTTGACAACAGAATGGTTCAGAAACTTTAATTTGCAAAAGAAATCAAAGGACAAAAGACAAATAGAGATGAAGCTCAAGGATAACAACCTTTACCACTTCTGTGTTTTCTCTGATAACATTCTTGCAACTTCAGTAGTGGTCAATTCAACTGCAATGAATTCTAAAAATCCCAATATGATTGTTTTTCACCTTGTCACGGATGAAATAAACTATGCTGCGATGAAGGCATGGTTTGCGGTGAATGATTTCCATGGAGTGACTGTGGAAGTTTCGAAGTTTGAAGACTTTACTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGACTCTGAAATACAGAGCTACTACTTTTCTGGCAACAGTGATGAGGGAAGAACACCTATCAAGTTCCGTAACCCTAAATATCTGTCCATGCTTAATCACCTGAGATTCTACATACCTGAAGTCTTTCCCTTACTAAAGAAGGTGGTGTTCTTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATCTGAATGGTAATGTAAATGGAGCTGTTGAAACATGCATGGAGACATTTCACAGATACCACAAATATTTGAACTACTCTCATCCTCTTATACATGCACATTTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTGAATGGAGGAAAAAGAACGTAACTGGCATTTATCACTACTGGCAGGAAAAGAACGTAGACAGGACATTGTGGAAACTTGGTACCTTGCCGCCTGGACTGTTGACATTTTATGGATTAACTCAGCCCTTAGATCCATCGTGGCACGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATAGAAAGGGGTGCTGTGCTACATTTCAATGGAAATTCCAAACCATGGTTGAAGATTGGGATAGAGAAGTACAAGCCCCTACCTTGTGGAAGATTCAGATTCAGAATTACTTGCCTCAGTTGGTGGGGTAGGAAATTATATCAGTGGCTGTTTGTGGAACTGGTAGGCTGGGGGAGATGCTTACTGGATGGCCAGATTCAGCTCTTAATTCGTTGTCAGAAATGTTTGTACAATTTTGGAAGGTCAAACATGTCTGGTGGCTTTATCTTTGGTGTCTTCATTGAATCTGGATCTTCTGATGTAGCATATACACGTTCATCTGTCAGATATTAG 1797 0.4062 MRRRATDFRRPVRRKVPDALWWALCCAVILLFVYILSKGNKIESRPALSKRTYKHDKIMEGLNITEEMLNSNSVTRQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQRLLSNAATRRVPLTTRETEKAIRDMALLLYQAQQLHYDSATMIMRFKAKIQALEEQMNSVTEKSSKYGQIAAEEVPKSLYCLGVRLTTEWFRNFNLQKKSKDKRQIEMKLKDNNLYHFCVFSDNILATSVVVNSTAMNSKNPNMIVFHLVTDEINYAAMKAWFAVNDFHGVTVEVSKFEDFTWLNASYVPVLKQLQDSEIQSYYFSGNSDEGRTPIKFRNPKYLSMLNHLRFYIPEVFPLLKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIHAHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTQPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLPCGRFRFRITCLSWWGRKLYQWLFVELVGWGRCLLDGQIQLLIRCQKCLYNFGRSNMSGGFIFGVFIESGSSDVAYTRSSVRY 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01003 598 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 515 IPR029044 -
Vimu4g01003 598 Coils Coil 155 175 - -
Vimu4g01003 598 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 514 IPR029044 -
Vimu4g01003 598 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 64 515 IPR029993 GO:0047262
Vimu4g01003 598 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
Vimu4g01003 598 CDD GT8_like_1 228 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01003 Vimu-Chr4 8427079 8430141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01003 1 515 Glycosyltransferase AT2G20810 79.537 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01003 K13648 - gmx:100792018 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01003 4 8427079 8430141 Vimu4g01003 4 8427079 8430141 ECH
Vimu4g01003 4 8427079 8430141 Vimu5g01505 5 26259601 26262225 PCT