Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01485 ATGACGCAGCACCAACCAACCTTAATGGAACCTCTTCTCACCCACAACCTCGCCAATGCCAAACCCAACTATGACTATGATGTCATAAACTGGTTTGAACATGTATCCCATAATGCTGCTTTTGTCCAGACTCAGTTGCTCACCCAGATTTTGAAGCAAAACTATGGAGTGGAATATCTCAAGAAATGGCTGGGGAACTACAATATCCTTGAGATGGACGCATGTGCATTGGAATCCCTTTTCTCTTCTGTGGTTCCCCTTGCCTCACATGCTGATTTTGAGCCATTTATCCAAAGGATTGCTGATGGGGACACAGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGCTCTGGAACAACAGAGGGAAGGCAAAAGTTCGTACCCTTTACTCGCCATAGTGCACAAACCACGCTTCAAATATTCACCCTAGCAGCAGCCTATAGATCAAGGGTTTATCCAATAAGGGAAGGAGGAAGGATTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGCAGGAACAGCCACAACACACTACTATGCAAGTGAAGAATTCAAAATCAAGCAGGATGCGACCAAATCCTTCACTTGCAGTCCCCAAGAAGTGATTTCTGGTGGAGACTACAAACAATCCACGTATTGCCACCTCCTTCTTGGCCTCTTTTACTCTGACCAAGTGGAATTTATCACCTCGGCTTTCATCTACAGCATGGTGCAAGCTTTCAGCAGTTTTGAAGAAAACTGGATAGAGATTTGCAATGACATCAGAGATGGCACTCTTAGTTCAAGAATCAAGTTACCAAAAATGAGAAAGGCTGTTTTGGACATCATCTTTCCAAGCCCAGATTTGGCTTCGAAGTTGGAAAGTGTTTGCCATGAGCTAGAACTGGTAGAGTGGTCTGGTTTAATTCCTAAACTCTGGCCAAATGCTAAGTATGTCTACTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAGCTTAGGCATTATGCAAATGGGTTGCCTTTGGTTAGTGCTGATTATGGCTCAACGGAGAGCTGGATAGGGGTTAATGTTGATCCTAGTTTACCACCAGAAAATGTAACATTCGCTGTGGTTCCTACTTTCGCTTACTTTGAGTTCATCCCACTTCACAGGAATGAAAAAAAACTTAGTTCAGCAGCTGATGATTTCACGGAAGATAAGCCAATTCCTCTCTCTCAGGTTAAACGAGGACAAGAGTATGAAGTTGTCCTCACAACTTTCACCGGACTATACAGGTGCAGGCTAGGGGATGTGGTGGAAGTGGGAGGGTTCCACAATGGGACCCCAAAGTTGAACTTTGTGTGTAGAAGAAAGCTAATATTGACAGTAAACATAGACAAGAACACAGAAAAGGACCTTCAACTAGTGGTAGAAAGAGGGTCCCAGATTCTGACAAAGGGAAAAGCCGAGCTGGTTGATTTCACAAGCTATGCAGATGTGTCAAAGCAACCAGGAAACTATGTAATATTTTGGGAGATAAAAGGGGAGGTAGAAGACAAGATCCTTGGTGCATGTTGCACTGAAATGGACAAATTGTTCATGGATCATGGGTATGTGGTGTCAAGAAAAACCAACTCGATAGGGCCCTTAGAACTCTGCATTTTGGAGACTGGGACTTTCAAGAAGATTCTGGACAACTTCATCGCAAATGGGGCAGCCTTGAGCCAATTCAAAACCCCCAGGTGCACCACCAATCGTGTCCTCCTCAAAATTCTCAACACGTGCACCATAAAAAGGTTTCAAAGCACTGCTTACAACACTTGA 1821 0.4355 MTQHQPTLMEPLLTHNLANAKPNYDYDVINWFEHVSHNAAFVQTQLLTQILKQNYGVEYLKKWLGNYNILEMDACALESLFSSVVPLASHADFEPFIQRIADGDTAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGRILEFIYSSNRFKTKGGLTAGTATTHYYASEEFKIKQDATKSFTCSPQEVISGGDYKQSTYCHLLLGLFYSDQVEFITSAFIYSMVQAFSSFEENWIEICNDIRDGTLSSRIKLPKMRKAVLDIIFPSPDLASKLESVCHELELVEWSGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPENVTFAVVPTFAYFEFIPLHRNEKKLSSAADDFTEDKPIPLSQVKRGQEYEVVLTTFTGLYRCRLGDVVEVGGFHNGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSQILTKGKAELVDFTSYADVSKQPGNYVIFWEIKGEVEDKILGACCTEMDKLFMDHGYVVSRKTNSIGPLELCILETGTFKKILDNFIANGAALSQFKTPRCTTNRVLLKILNTCTIKRFQSTAYNT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01485 606 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 27 604 IPR004993 -
Vimu5g01485 606 Pfam GH3 auxin-responsive promoter 31 585 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01485 Vimu-Chr5 25953274 25957329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01485 27 602 EF-hand Containing Proteins AT1G23160 34.687 3.13e-117 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01485 K14487 - gmx:100792358 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01485 5 25953274 25957329 Vimu5g01485 5 25953274 25957329 ECH
Vimu4g01015 4 8556486 8560130 Vimu5g01485 5 25953274 25957329 PCT