Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01015 ATGGAACCTGCAGTTCTCAGCTGCAAAACTCATGCCAACACCTTCTCCAATTCCAACTGCATTACTGACTTTGATGATATCATTACCTGGTTTCAACACGTTTCCGAGAACGCCGCTTCTGTTCAGACTCAGACATTGTGCAGGATTCTTAAGCAGAACTGTGGGGTTGAATATCTGAACAAATGGTTGGGGAGCTACGGTATCTCAGACATGGATGCTTCTGAGTTGGAATCTCTTTTCACTTCTCTTGTTCCCCTTGCTTCGCATGCAGATTTCGAGCCTTATATCCAAAAAATTGCAGATGGAGACACTGCTCCTATACTCACACAACAACCTATAACCACTCTCTCTTTGAGGGGAGGCAGAAGTTCGTACCCTTTACCCGCCATAGTGCTCAAACGACCCTTCAAACTTTCACTTTATCAGCAGCCTTTAGATCAAGTTCTTATGCCTTTTGTTTTCATCACTGTTAATAGGGTTTATCCCACGAGGGAAGGAGGTAGGATTCTTGAATTCATATACAGCAGCAACCAGTTCAAAACAAAAGGAGGTTTAACGGGTGGAACAGCCACAACACATTATTATGAAAGCCAGGAATTCAAAATCAAACAAGAGAAAACAAAGGCATTCATTTGCAGTCCGTACGAGGTTATATCAGGAGGGGATTACAAACAATCAACGTACTGTCACCTCCTTCTTGGCCTCTTCCTCTGTGATCACGTAGAGTTTATTTCCTCGGCTTTTGTCTACGGCATAGTGCAAGCTTTTTGCACCTTGGAAGAGGTTTGGAAAGACATCTGCAATGACATTAGAGATGGGACTTTGAGTTCAAGAATCAAGATTCCCAAAATGAGAGATGCTGTTTTGGGTATCATCTCTTCAAACCCATCTTTGGCCTCAAAAATAGAAGCCTCTTGCTTGGAGCTAGAAGCGGAGGATTGGTTTGGTTTGGTTCCCAAACTTTGGCCGAACACCAAGTACGTTTGTTCCATAATGACAGGTTCTATGCAACATTACTTGAAAAAGCTTAGGCATTTTACAAATGGGGTGGCACTAGTAAGTGGTGACTATGGTTCAACTGAGAGCTGGATAGGGATTAACGTGGATCCGAGTTTGCCTCCAGAGAAAGTAACCTTTGCTGTGGTACCCACGTTCTCTTACTTTGAGTTCATACCACTGTATAGACACAAACGCAAGCAAGATTCCAGCTTTGTAGCTGATCATGATTTCGTGGAAGGCGAGCCAATCCCTCTTTCGCAGGTTAAAGTTGGCCAAGAACTAGGAGATGTTGTGGAAGTGGGAGGTTTTCACAATGGGACTCCAAAGTTGAATTTCATATGCAGAAGAAAACTAATTCTAACAGTGAATATAGATAAGAACACAGAAAAAGACCTTCAACTGGTGGTAGAGAAAGGGTCACAGCTTCTGAACAAGGGCAAAGCTGAGCTTGTTGATTTTACAAGCTATGCAGATGTCTCTAAAGAACCAGGGTGTTACGTCATTTTCTGGGAGGTGAAAGGTGAGGCTGAGGATAAGGTACTTGAGGCATGTTGCAGGGAAATGGATGCAGCTTTTGTCGACCATGGCTATGTGGTTGCAAGGAAAACCAGTTCAATAGGGCCTTTGACACTTTGCATTGTAGAGAGAGGAACTTTCATGAAGATTTTGGATTATTTCGTGGAGATTGGGGCAGCACTGGGCCAGTTCAAGACTCCTAGGTGCACTAACAACCCTGTCCTCGTCAAAATTCTCAGTGCATGCACCATTAAAACATTTCGTAGCACTGCTTATAGTTCAACCCATTAA 1806 0.433 MEPAVLSCKTHANTFSNSNCITDFDDIITWFQHVSENAASVQTQTLCRILKQNCGVEYLNKWLGSYGISDMDASELESLFTSLVPLASHADFEPYIQKIADGDTAPILTQQPITTLSLRGGRSSYPLPAIVLKRPFKLSLYQQPLDQVLMPFVFITVNRVYPTREGGRILEFIYSSNQFKTKGGLTGGTATTHYYESQEFKIKQEKTKAFICSPYEVISGGDYKQSTYCHLLLGLFLCDHVEFISSAFVYGIVQAFCTLEEVWKDICNDIRDGTLSSRIKIPKMRDAVLGIISSNPSLASKIEASCLELEAEDWFGLVPKLWPNTKYVCSIMTGSMQHYLKKLRHFTNGVALVSGDYGSTESWIGINVDPSLPPEKVTFAVVPTFSYFEFIPLYRHKRKQDSSFVADHDFVEGEPIPLSQVKVGQELGDVVEVGGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQLVVEKGSQLLNKGKAELVDFTSYADVSKEPGCYVIFWEVKGEAEDKVLEACCREMDAAFVDHGYVVARKTSSIGPLTLCIVERGTFMKILDYFVEIGAALGQFKTPRCTNNPVLVKILSACTIKTFRSTAYSSTH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01015 601 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 24 597 IPR004993 -
Vimu4g01015 601 Pfam GH3 auxin-responsive promoter 30 577 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01015 Vimu-Chr4 8556486 8560130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01015 26 595 EF-hand Containing Proteins AT1G23160 32.492 1.03e-94 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01015 K14487 - gmx:100810952 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01015 4 8556486 8560130 Vimu4g01015 4 8556486 8560130 ECH
Vimu4g01015 4 8556486 8560130 Vimu5g01485 5 25953274 25957329 PCT