Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01190 ATGGATGCATCTTGTATGCACATAGCAATGTTTCCATGGTTTGCCATGGGTCATTTAACACCTTATCTCCATCTCTCCAACAAATTAGCAAAGAGAGGACACAAAATATCCTTCTTCATTCCGAGAAGAACACAATCCAAGTTAGAGCAATTCAACCTCTTCCCAGATCTCATCACCTTTTACCCTATCAATGTTCCTCATGTTGAAGGTCTTCCTCTTGGTGCAGAAACCACTTCCGATGTATCCTTTTCTTTAGGTCCACTCATTATGACAGCTATGGATCGCACTGAGAGGGATATAGAGCTTCTCCTCAAACAGCTAAAACCGCAAATTGTTTTCTTTGACTTCACGCATTGGCTACCGAACTTGACTCGTCGCATGGGGATCAAATCTATTCAATACTGGATTGTTGGCCCAGCAACAGTATCTTACGTTAGATCCCCACCAATGATAGGCCAAAACATGACTGAAAGAGATCTTAAGCAACCCCCTCCTGGGTACCCTGTGTCATCTATCAAGCTTCGTTCCCATGAAGCCAATTTCCTTGCTTCTAAAAGGAATTGGGAGTTTGGTAGCGGTGTTCTCTTCTCTGACCGCCTCAACAATGGTTCAATGCTATCAGATGCAATTGGGTTCAAAGGTTGTAGAGAAATTGAGGGGCCTTATGTTGACTACCTTGCAGAGCAATTTGGGAAGTCTGTTATCCTTTCAGGACCTATCATACCTGAGTCACCCACCACTGTTTTAGAGGAAAAATGGAGTGCGTGGCTTGGAAGGTTCAAGGATGGTTCTGTGGTTTTCTGTGCACTTGGGAGTGAATGGAAATTACCACACGATCAGTTCCAAGAATTGGTACTGGGTCTTGAACTTACGGGACTTCCATTTTTGGCTGTTGTAAAAGTTCCAATTGGGTTTGAGACAATTGAAGCTGCGTTGCCAGAAGGGTTTAAGGAAAGGGTTGAAGGGAGAGGGATTGTTCACAGTGGATGGATACAGCAACAGTTGATTTTGGGACACTCATCAGTGGGTTGCTTCATAACACACTGTGGTGCTGGTTCGTTAACTGAGGCATTAGTAAATAAGTGTCAAATGGTATTACTGCCACAACTTGACGGTGACCATATCATTAACGCTAGGATGATGGGTAGCAACTTGAAGGTTGGAGTTGAAGTGGAGAAAGGTGAAGAAGATGGTTTGTTCACGAAGGAGAGTGTGAGCAGAGCAGTCAACATTGTGATGGATGAGGAGAATGATGTTGGCAAACAGGTTAGAGCAAACCATGCAAAATTGAGGAATTTCCTCCTAAGCGGGGGTTTAGAGACGACTTGTCTTGATTACTTTTGTCAAAAGCTTCAAGATTTACTCAAATAG 1371 0.434 MDASCMHIAMFPWFAMGHLTPYLHLSNKLAKRGHKISFFIPRRTQSKLEQFNLFPDLITFYPINVPHVEGLPLGAETTSDVSFSLGPLIMTAMDRTERDIELLLKQLKPQIVFFDFTHWLPNLTRRMGIKSIQYWIVGPATVSYVRSPPMIGQNMTERDLKQPPPGYPVSSIKLRSHEANFLASKRNWEFGSGVLFSDRLNNGSMLSDAIGFKGCREIEGPYVDYLAEQFGKSVILSGPIIPESPTTVLEEKWSAWLGRFKDGSVVFCALGSEWKLPHDQFQELVLGLELTGLPFLAVVKVPIGFETIEAALPEGFKERVEGRGIVHSGWIQQQLILGHSSVGCFITHCGAGSLTEALVNKCQMVLLPQLDGDHIINARMMGSNLKVGVEVEKGEEDGLFTKESVSRAVNIVMDEENDVGKQVRANHAKLRNFLLSGGLETTCLDYFCQKLQDLLK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01190 456 FunFam Glycosyltransferase 2 252 - -
Vimu4g01190 456 PANTHER GLYCOSYLTRANSFERASE 6 449 - -
Vimu4g01190 456 FunFam Glycosyltransferase 253 436 - -
Vimu4g01190 456 CDD GT1_Gtf-like 6 431 IPR002213 GO:0008194
Vimu4g01190 456 Gene3D Glycogen Phosphorylase B; 253 434 - -
Vimu4g01190 456 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 441 - -
Vimu4g01190 456 Gene3D Glycogen Phosphorylase B; 5 252 - -
Vimu4g01190 456 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 329 416 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01190 Vimu-Chr4 10727288 10728658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01190 3 456 Glycosyltransferase AT5G54010 47.253 2.87e-152 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01190 K22794 - gmx:100808470 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01190 4 10727288 10728658 Vimu5g01319 5 23359042 23360515 PCT