Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01141 ATGGCTTCGGGACAAATTGGTGGAGATGATGGCAGCAAAAAGGAGCAGAGATACACCGAGAGCAAGGTCTACACAAGGAAAGCGTTTAAAGGTCCTAAGAACAAAGTCAACGCCGTGAACGTCGCTCCTCATACTACCGCTGCAACTATTACCAACGACGGCGACGACAGTTCGGGTACCATTACTGCCGCGCATTACAACAGTAAGGATAACATCACTGTCGATAACGGTAATACTAGGGCTAAGGATAATTGCAATAACGCCTTGGTTCAGCAGGGCCTGGAGGATGGGAATTCAGCTCGGCCGTACGTGAATCGTGCTTTGAATGAGTCTTCCAGTGTCCCCGGCTTACCAGAATGGTTGCCGGGACCGGGGAGTTTTGTTAGGCTAAGGTTGGATTGGCGGTCTAAGCCGGAATTAATGAGGAGGCTTGAGAGTGAGCTCAATATGGTTAGGAGTTTGGTGAGTAGGATTGAAGAGAAGTTGGGGATGATTGGTGCGTATGGTAATTCAGATATGATGGTGGATAGTGGGACTGGTAATAGGGTTGGAACAAAGCGTACTCATTCGGAGGTGGCCTCGGCTGTTGTTCCACCACGAGAGCCTTCCCAACCTTTGCATCAGTTGAGCGTATCAGTGTTGGAGAATAGTCAAGGGGTTGGTGAAACCGTTGAGAAGGAGAAGAGGACGCCCAAGGCGAACCAGTTCTATCGCAATTCGGAGTTCTTGCTTGGGAAAGAAAAGTTTCCACCTTCAGGAAGTAACAAGAAGTCTAAATTGAATGGCAAGAAGCATGGTGCAGCTGAGATGGGACATGGAATGGGATTGAAGCTTTTGAAGAGTTGTGGCTCGTTGCTTGAGAAATTGATGAAGCACAAGCATGGTTGGGTGTTTAATGCTCCAGTTGACGTTGAGGGTCTTGGTTTGCACGATTATTTTGATATCATCACGCATCCAATGGACCTGGGTGCTGTGAAGTCAAGGCTGAACAAGAATTTGTACAAGTCACCCAAGGAGTTTGCTGAGGATGTGAGACTTACATTTCGCAATGCCATGACTTATAATCCCAAAGGACAAGACGTTCATATAATGGCTGAGCAGCTGTCAGATTTATTTGAGGAGAGATGGGCTGTAATAGAGTCAAATTACAACCACGAAATGAGATTTGACCAAGATTATGGTGCGGCTGGCCCTTCACCTCCTCCTCTGTCTAGAAAGGCTCCTGCATTTCGGCCCCCGCCTATTGATACGAGACGGATTTTGGATAGGTCAGAATCAATGACACAACCTCCAAAAATCATGAGCATCGCTCCTTCGTCTCGAACCCCTGCTCCCAAAAAGCCTAAGGCGAAAGACCCTCATAAAAGAGACATGACATATGAGGAAAAGCAAAAACTAAGCACAAACCTTCAGGGTCTACCTTCTGAGAAGCTAGATGCCATTGTACAGATTATTAAGAAGAGAAATTCGGCACTTTCCCAGCATGATGAAGAAATTGAAGTGGACATTGATAGTGTGGATACGGAGACTCTCTGGGAGCTTGATAGATTTGTGACAAACTATAAGAAAAGTTTGAGCAAAAATAAGAGGAAGCTTGAACTTGCTCTTCAAGCTAGAGCACAAGCTAAGCAGAATGCCCTGCAAAAGAGTCCGGCACCGGTTATGGTTGAGATTTCAGAAGAAGCACAAACGGAAGATGAAAGAAATCCTCCCCCATCCTTGCCCGCTCAAGAAGAAGTTCAAGCGGATGGGAGCAAGACAAGTGGTTCAAGCAGCTCCAGCAGTGATTCAGGCTCTTCATCAAGTGTTACTTTGATTAATTATTTAGTCAAGAGATATCTTGACCATTATTATTCTTACTACTGCATGCTCACTTCTACTTTTCGTTTTGGTCAAGTGTTCTGTCTGATTTTTATTTATTTTATTCTTGCAGATTCTGATACTGGTAGTTCCTCAGCCTCTGGGTAA 1968 0.4543 MASGQIGGDDGSKKEQRYTESKVYTRKAFKGPKNKVNAVNVAPHTTAATITNDGDDSSGTITAAHYNSKDNITVDNGNTRAKDNCNNALVQQGLEDGNSARPYVNRALNESSSVPGLPEWLPGPGSFVRLRLDWRSKPELMRRLESELNMVRSLVSRIEEKLGMIGAYGNSDMMVDSGTGNRVGTKRTHSEVASAVVPPREPSQPLHQLSVSVLENSQGVGETVEKEKRTPKANQFYRNSEFLLGKEKFPPSGSNKKSKLNGKKHGAAEMGHGMGLKLLKSCGSLLEKLMKHKHGWVFNAPVDVEGLGLHDYFDIITHPMDLGAVKSRLNKNLYKSPKEFAEDVRLTFRNAMTYNPKGQDVHIMAEQLSDLFEERWAVIESNYNHEMRFDQDYGAAGPSPPPLSRKAPAFRPPPIDTRRILDRSESMTQPPKIMSIAPSSRTPAPKKPKAKDPHKRDMTYEEKQKLSTNLQGLPSEKLDAIVQIIKKRNSALSQHDEEIEVDIDSVDTETLWELDRFVTNYKKSLSKNKRKLELALQARAQAKQNALQKSPAPVMVEISEEAQTEDERNPPPSLPAQEEVQADGSKTSGSSSSSSDSGSSSSVTLINYLVKRYLDHYYSYYCMLTSTFRFGQVFCLIFIYFILADSDTGSSSASG 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01141 655 MobiDBLite consensus disorder prediction 560 601 - -
Vimu4g01141 655 MobiDBLite consensus disorder prediction 580 601 - -
Vimu4g01141 655 Coils Coil 141 161 - -
Vimu4g01141 655 Pfam Bromodomain extra-terminal - transcription regulation 458 519 IPR027353 -
Vimu4g01141 655 PRINTS Bromodomain signature 293 306 IPR001487 GO:0005515
Vimu4g01141 655 PRINTS Bromodomain signature 325 343 IPR001487 GO:0005515
Vimu4g01141 655 PRINTS Bromodomain signature 309 325 IPR001487 GO:0005515
Vimu4g01141 655 PRINTS Bromodomain signature 343 362 IPR001487 GO:0005515
Vimu4g01141 655 Pfam Bromodomain 284 366 IPR001487 GO:0005515
Vimu4g01141 655 Coils Coil 525 545 - -
Vimu4g01141 655 MobiDBLite consensus disorder prediction 10 26 - -
Vimu4g01141 655 Gene3D - 451 531 IPR038336 -
Vimu4g01141 655 ProSiteProfiles Bromodomain profile. 290 362 IPR001487 GO:0005515
Vimu4g01141 655 MobiDBLite consensus disorder prediction 247 267 - -
Vimu4g01141 655 MobiDBLite consensus disorder prediction 1 26 - -
Vimu4g01141 655 CDD Bromo_plant1 278 376 IPR037377 -
Vimu4g01141 655 PANTHER OSJNBA0053K19.4 PROTEIN 137 602 - -
Vimu4g01141 655 Gene3D - 259 392 IPR036427 GO:0005515
Vimu4g01141 655 SMART bromo_6 271 381 IPR001487 GO:0005515
Vimu4g01141 655 SUPERFAMILY Bromodomain 263 384 IPR036427 GO:0005515
Vimu4g01141 655 ProSiteProfiles NET domain profile. 448 529 IPR027353 -
Vimu4g01141 655 MobiDBLite consensus disorder prediction 393 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01141 Vimu-Chr4 10000972 10003104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01141 - - gmx:100795530 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01141 4 10000972 10003104 Vimu4g01141 4 10000972 10003104 ECH
Vimu4g01141 4 10000972 10003104 Vimu5g01287 5 22845181 22848146 PCT