Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01152 ATGGGTAACATTGATCAAACCCGCATGTGGAAGGTTGGTGAGCGTGTCCGTTCTACAAGACCAGCAGGTGATCAAGGCCCGTTATATCCTTTTACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGGAAGAAAGGGCATTCCTACTCCGAAATCATTAACGAGAGTGTCATCGAGGCTGTTGATTCTTTGAATCCATTCATGCATGCTCGTGGCGTTTCTTTCATGGTTGATAACTGTTCAACCACGGCTAGGTTGGGTTCGAGGAAATGGGCTCCACGATTTGATTACGTTCTTACCCAGCAGGCCTTGGTGGCGGTGGACAATGAAACCCCTATTAACCAGGACTTACTCAGCAACTTTCTTTCGGACCCAGTTCATGGAGCCATTGAAGTCTGCGCCAAACTGAGACCCACAGTTGACATTTCTGTGCCAGCAGATGCAGACTTCGTTCGTCCAGAATTGCGCCACTCCAGCAATTAG 498 0.4859 MGNIDQTRMWKVGERVRSTRPAGDQGPLYPFTAGVFVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYVLTQQALVAVDNETPINQDLLSNFLSDPVHGAIEVCAKLRPTVDISVPADADFVRPELRHSSN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01152 165 Gene3D - 1 162 IPR013328 GO:0016491
Vimu4g01152 165 ProSiteProfiles KARI C-terminal domain profile. 1 160 IPR000506 GO:0004455|GO:0009082
Vimu4g01152 165 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 33 107 IPR000506 GO:0004455|GO:0009082
Vimu4g01152 165 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 2 162 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01152 Vimu-Chr4 10140395 10144971 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01152 K00053 - sind:105178441 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01152 4 10140395 10144971 Vimu4g01152 4 10140395 10144971 ECH
Vimu4g01152 4 10140395 10144971 Vimu5g01281 5 22762023 22766197 PCT