Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01160 ATGGCTGCCCGTAACATTGAGAAGATGGCCTCGATTGATGCTCAGTTGAGGTTGCTGGCACCACGTAAGGTCTCTGATGATGACAAACTGGTTGAGTATGATGCTCTTTTGTTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTTCAAGATTGTTATGAGCTGTCAGCTGAATACGAAGGGGAGCATCGACCTGAAAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAATCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCTTACCGAAGAAGGATCAAGTTATTGAAGAAGGGTGATTTTGCGGATGAGAACTCTGCCATGACAGAGTCAGACATTGAAGAGACCTTGAAGAAGCTTGTGACTCAACTGAAGAAGACCCCCCAGGAAGTCTTTGATGCTCTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACCCAGTCTGTTCGCAGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCCAAAGACATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGAACTCCTCCTACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCAAAGTTTCTTCGCCGGGTTGATACAGCTCTGAAGAACATTGGAATAAACGAACGTGTCCCATATAATGCCCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCAAGAGTAACACCTGAAGTTACAAGGGATGTGTGTTTGTTGGCTAGAATGATGGCTGCTAATATGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGCTGTCTATGTGGCGTTGCACTGACGAGCTCCGTGTTCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTACATTGAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAGCTCTATAACACACGTGAACGTGCTCGCCAGTTACTAGCCAATGGGACCTCTGATATCCCAGAGGAGACAACCTTCACTAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTATGCTATAGGTCACTCTGTGCATGTGGTGACAGACCAATAGCAGACGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCCACATTTGGACTCTCACTTGTGAGGCTTGATATCCGTCAAGAGTCAGATAGGCACACTGATGTAATGGATGCAATCACAAAACACTTAGAAATTGGATCATACCGAGAGTGGTCTGAGGAAAAGAGGCAGGAGTGGCTCTTGTCTGAACTCAGAGGAAAACGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCACTGATGTTTTGGAAACCTTCCATGTCATTTCAGAGCTACCTAAAGACAACTTTGGTGCCTACATCATATCAATGGCCACAGCTCCATCTGATGTGCTTGCGGTGGAGCTTTTACAACGTGAGTGCCATGTGAAGGAGCCACTGAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCTCCGGCTTCCGTGGCGCGACTTTTCTCCATAGATTGGTACAGAGACCGCATCAATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCAGGAAAAGATGCTGGCCGTCTTTCAGCTGCTTGGGCCCTTTATAAGGCTCAAGAGGAACTCGTGAAGGTTGCTAAGGAGTTTGGTGTGAAGCTTACAATGTTTCATGGGAGAGGAGGGACTGTTGGAAGAGGAGGAGGACCAACTCATCTTGCTATTTTGTCTCAGCCACCAGACACCATTCATGGCTCACTTCGGGTAACGGTTCAGGGTGAAGTCATTGAACAGTCTTTTGGAGAGGAGCATTTATGCTTTAGGACACTTCAAAGGTTCACTGCAGCCACGCTTGAGCATGGCATGCATCCTCCTGTGTCACCAAAACCTGCATGGCGCGCTCTCATGGAGGAGATGGCTGTCATTGCCACTCAGGAGTATCGCTCTGTTGTTTTCAGAGAGCCTCGTTTTGTTGAATATTTCAGACGTGTAAGTGCTGCTAGTACTCAGTCTTTAGTGATTAACCTTTCTTTAGAAGATACCCTTTGGAAAAATCTAGCAGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGAGAAAGCCAAGCGGAGGAATTGAATCGCTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACAAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGGCAGCATTTAAGCATGTTGTTGAGAAAGATCCAAAGAATCTGCAAATGCTTCAGGATATGTACAACCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTTGCCAAGGGAGACCCTGGGATTGCATCCCTATTTGATAAACTCCTAGTACCACAAGAGCTACGTCCATTTGGAGAGAGCTTAAGGGCTAAATACGAAGAAACCAAGAACTTTCTCCTCCAGGTTGCTGGGCACAAGGATCTTCTTGAAGGGGACCCCTACTTGAAGCAAAGACTTCGACTTCGTGACTCATACATCACAACCCTGAATGTGCTGCAAGCCTACACATTGAAGAGAATTCGTGATCCTGACTACCATGTGAAGCTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCTGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCACCTGGCCTTGAAGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAGAACACCGGTTAA 2973 0.4568 MAARNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHRPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAMTESDIEETLKKLVTQLKKTPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCTDELRVRAHELHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWSEEKRQEWLLSELRGKRPLFGHDLPKTEEITDVLETFHVISELPKDNFGAYIISMATAPSDVLAVELLQRECHVKEPLRVVPLFEKLADLEAAPASVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPAWRALMEEMAVIATQEYRSVVFREPRFVEYFRRVSAASTQSLVINLSLEDTLWKNLAATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIASLFDKLLVPQELRPFGESLRAKYEETKNFLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01160 990 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 169 180 IPR018129 -
Vimu4g01160 990 Gene3D Phosphoenolpyruvate/pyruvate domain 309 444 - -
Vimu4g01160 990 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 990 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 221 237 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 168 181 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 281 296 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 990 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 990 IPR015813 GO:0003824
Vimu4g01160 990 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
Vimu4g01160 990 FunFam Phosphoenolpyruvate carboxylase 1 309 444 - -
Vimu4g01160 990 Pfam Phosphoenolpyruvate carboxylase 763 990 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu4g01160 990 Pfam Phosphoenolpyruvate carboxylase 36 742 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01160 Vimu-Chr4 10218281 10223247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01160 K01595 - gmx:100812219 1856.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01160 4 10218281 10223247 Vimu4g01160 4 10218281 10223247 ECH
Vimu4g01160 4 10218281 10223247 Vimu5g01247 5 22274547 22280508 PCT