Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01105 ATGATTGAATTTAAGGGTGGATTTGAAGAATCACTGGTGACCCTTTTGTTGTTGTGTCTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAGAAATGATGACCAGAAACAACAGCACCTTCTTCACGGAGGTGTTGCTGCTGGTAGTGGCGGCAAAACCAATAGCAGGAACAACCGCAATGGCTTTATTCCCAGTACCTTTCGTACTTTCTCTGGTTACCTGAAGATTGTTTCATCAGGTGCTTCTACCGTCGCTCGGTCAGCTGCTGCCTCCTTTGCATCGTCGATTTTGGATAAGCATGGGGATACTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACCTTCGAGGGCCAGGGAGAAGTCATTCGGCAAGTACTTCTTCTAGGCTATTGGTCCGGCTTCCAGGTTTGGGATGTTGATGATTCAGATAATATCTGTGACCTTGTTTCCAAACACGATGGTCCTGTTTCTATTATGCGAATGGTACCTAGTCCAACTGTATCGAAGAGACTGGAGGACACGTTTGCAGACAAGCGCCCATTGTTGGCAGTATGTGTGGATGATTCTTTGGTGGGGAGAGACAAAATACAAGAGGGGTTGGTTGGCACTTGCAACGTGGGCACTTTAAGCCACCATGACCAAGTGAATGGAAACTATCTGCCATCAACTGTTCAATTTTATTCTATGAGATCCCAATCATATGTTCATACACTAAACTTTAGATCAGTTGTTTATTCTATAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTAGCCACTCAGATACACTGTTTTTCTCCCACAACTTTATTAAGGGAGTATATTTTACATACTAATCCTGTAGTCATGAGTTGTCCTGGTTCTGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCAAGATGGCTGGCCTATAGTGGAATCGCTACTGTAATAGCTTCTTCTGGGCGTGTCAGCCCACAGCATTTAACACCTTCTGCAAGCTTTCCTGGCTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCCGCTGGGATTGTGAACCTTGGAGATATGGGGTATAAGAAACTTTCCAGTTACTGCTCAGAACTTCTCCCAGATAACAGTGGTTCAGTACAATCTGTGAATTCTAGCACAAAAGGAAATGGAATCATCCATGGCCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGAGATATTGTCAGTAAAAATGTCATTGCTCAATTTCGGGCCCACAAGAGTCCCATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATCTTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTATAAGATAATGCCTGGATATGACAGAGTGTCAGCATCTGATGCTGGCTCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCATAACAAATGCAGTTATTCAAGATATCAGTTTTGGTGTTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGAACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTATCATGTGACAATAGTTTAACTGAAAAAGATGGTTTGAGTGTTATGCCTAATCAAGCAGTTCATTGGCCTTGTAATTCAGCTGTAAAAATTTGTAAACAGCAGAGCCTCTGTGCTGCTGGTCCTCCTATCACACTCTCTGTTGTTAGCAGAATTAGGAATGGATCAAATGGCTGGAGAGGCACTGTAACTGGTGCTGCTGCAGCTGCAGCTGCGACAACTAGGTTAAGTTCCATTTCTGGGGCTATTGCTTCTTCTTTCTATAACGTAGAAGGCAGAAGTACCTTGTGTGTTAATGGGAAATATTCCAAGGAAAAGTATCATCTGCTAGTCTTTACATCCACAGGTTCAATGGTACAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGATGTTGTTTCTGGAGTAATTCCTGCACATGAGTCTGTCCCTATGACTGATGCGAAAGTAGTTATTGAGCCTATCAAGAAGTGGAATATAAGTTGTAGACATAGTTGGAGAGAGGGGGTAGAAAATATAGACATTTATGGAGAGAATGGAGTTTCAGACATCAATAAAGTATGTTCTGATGAAGTAAAGGATAGTATCATCAGCCCTAAAATGAAGAATGTATCCATGAAATCGAATCCACGTTCTGAGAAAGAACATCATTTGTACATTTCAGAAGCTGAACTGCAAATGCATGAAGCAAAGACTCAATTGTGGGCAAAGACTGAGATATATTTTCATTCACTGGCTAAAGAGGTTGCTTTGATGATGGATGAAGAAGCTGCTTCTGGAGGGGAATTTGAGATTGAAAAGATTCCGACTCGTGTGATAGAAGCTAGGTCGAAAGACTTGGTTCCGATTTTTGACTTTATTCAGACTTCAAAATTTCAACATACAAGGACTCCTGCTGTGGATAACAAGTTAAATGAACAAATTTTTCATCAAAATTCCAAGTTGTTTGAAAAGGGAAGGATTTCACCCAGTAGTAGATTTCCTGGTTATATGCCTAATTCTGGTGGAAATATTGATGAATTGAAAAGTGGCGTTGAAGGAAATGAGTGGGATTATGGTTTGATTCCAGCAGAAGCAGAGGGTCTTGTAAATAACAATAACACCCTTAAACCAGATACTAGTCCAGAGACTGTAAATAATAGAAAGGAGCACATAAACATGGATGTTCATCACATGTTTGTAAATAGTGACAGAAAGGTCTGA 2781 0.4146 MIEFKGGFEESLVTLLLLCLWIAVIFISLVLGMSRNDDQKQQHLLHGGVAAGSGGKTNSRNNRNGFIPSTFRTFSGYLKIVSSGASTVARSAAASFASSILDKHGDTDRDRVIWAGFDTFEGQGEVIRQVLLLGYWSGFQVWDVDDSDNICDLVSKHDGPVSIMRMVPSPTVSKRLEDTFADKRPLLAVCVDDSLVGRDKIQEGLVGTCNVGTLSHHDQVNGNYLPSTVQFYSMRSQSYVHTLNFRSVVYSIRCSSRVVAVSLATQIHCFSPTTLLREYILHTNPVVMSCPGSGGIGFGPLAVGPRWLAYSGIATVIASSGRVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVNLGDMGYKKLSSYCSELLPDNSGSVQSVNSSTKGNGIIHGHSTDVESVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASVQGHNINVYKIMPGYDRVSASDAGSSYVHLYRLQRGITNAVIQDISFGVDSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKDGLSVMPNQAVHWPCNSAVKICKQQSLCAAGPPITLSVVSRIRNGSNGWRGTVTGAAAAAAATTRLSSISGAIASSFYNVEGRSTLCVNGKYSKEKYHLLVFTSTGSMVQYALQTINCQDSDVVSGVIPAHESVPMTDAKVVIEPIKKWNISCRHSWREGVENIDIYGENGVSDINKVCSDEVKDSIISPKMKNVSMKSNPRSEKEHHLYISEAELQMHEAKTQLWAKTEIYFHSLAKEVALMMDEEAASGGEFEIEKIPTRVIEARSKDLVPIFDFIQTSKFQHTRTPAVDNKLNEQIFHQNSKLFEKGRISPSSRFPGYMPNSGGNIDELKSGVEGNEWDYGLIPAEAEGLVNNNNTLKPDTSPETVNNRKEHINMDVHHMFVNSDRKV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01105 926 Pfam Breast carcinoma amplified sequence 3 566 808 IPR022175 -
Vimu5g01105 926 SUPERFAMILY WD40 repeat-like 130 520 IPR036322 GO:0005515
Vimu5g01105 926 Gene3D - 119 517 IPR015943 GO:0005515
Vimu5g01105 926 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 58 842 IPR045142 GO:0006914
Vimu5g01105 926 SMART WD40_4 418 458 IPR001680 GO:0005515
Vimu5g01105 926 FunFam Breast carcinoma-amplified sequence 3 337 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01105 Vimu-Chr5 18641410 18648804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01105 - - var:108340445 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01105 5 18641410 18648804 Vimu5g01105 5 18641410 18648804 ECH
Vimu4g01239 4 11514827 11521566 Vimu5g01105 5 18641410 18648804 PCT