Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01239 ATGGCAGAGTCACAAGAAGTCTTAGCCATTAGACTGTTGGTCCTAGACGCAAAGGAGACTAACCTTAAAGGTGAAGAAGAAAACTGTTTGACAGCGTTGGATACTGAGAAGACGGTGAAGAACAGGGAGGGAAGCTGGGGGGTTATGATTGAGGGTGAATTTGAGGAATCGTTGATTTTTGTGTTGTGGTTAGGATCTATTTTGGTGTATTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGGCAAAACCAGCGGCTTCATTCCTAGTTCTTTTCGTGCTCTTTCTAGCTACCTCAGGATTGTTTCCTCTGGTGCTTCCACAGTTGCACGTTCTGCTGCGTCTGTTGTAGCTTCATCCGTTGTGGACAGAGATGATGTTCCCGACCATGATAAGGTTATCTGGGCTGGGTTTGACGAGTTAGAGGGTGAGGGTGAAGTTATTCAGCAAGTACTTCTTCTAGGCTACCGATCTGGCTTCCAGGTTTGGCATGTCGATGAATCAAATAATGTCCGTGACCTTGTATCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCCAATCCAATTGCATCAAAGAGATCTGAAGACAATTATGCGAACAGTCGGCAGTTGTTGGTTGTTTGTACTGATGGATTCTTTGTAGGAGGTAGCAATCTTCAGGATGGGTTGGCCACCCCTAATAATGGAAGCAATTTAAACTCACATGACCAAATGAATGGAAACTATTTACCGACTACTGTTAGGTTTTATTCTATGAAATCTCAATCATATGTTCATGTGCTGAAGTTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGAGTAGTTGCTATCTCTCAGTCCACTCAGATTCACTGTTTTGAAGCTACCACATTAATAAGGGCGTATATTTTACTTACCAATCCTATAGTCATGAGTGTCCCTGGTTCTGGAGGCATAGGTTATGGACCTCTTGCGGTGGGACCAAGATGGTTGGCATATAGTGGAAGTCCAGTTGCTGTTTCCAATTCAGGACATGTCAGCGGACAACATTTGATGCCTTCTGCAAGTTTTTCTGGTTTTTCTTCTAATGGCAGTTTGCTTGCTCATTATGCCAAAGAGTCCAGCAAGCATATTGCTACTGGTATTGTATCCCTCGGAGACATGGGGTATAAGAAACTTTCCAGATACTGCTCTGATACCAATGGTTCATTACAATCTGTAAATTCTGTCTCTAAGGGCATCGTAACCATTAATGGCCATTCAACAGAAGCAGATAACATTGGAATGGTTATTGTTAAAGATATTGTCTCCAGAAACGTTATTGCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCATTAAGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCTATTCAGGGTCATAACATAAATGTTTTCAAGATCATGCCTGTACAGGACAATTTTTCTGCTTCTGATACTGTCCCTTCTTATGTTCATCTGTACAAGCTGCAACGTGGCTTTACAAATGCGGTTATTCAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATCAGTTCCTCGAGGGGCACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCAATCCTATGATGATAATTTTACTATAAGAAATAGTGCATTAGGTGCTACAGCTAATCACCCCCAGGGATGGTCTCATGGTTCTGCCATGCAAAAGCCTAAACAAAAGAGTTTGGTTGTGGCCGGCCCTCCAATCACTCTTTCCGTGGTAAGCCGGATCAGGAATGGAGCCAATGGCTGGAGGGGCAGTGTAACCGGTGCTGCTGCTGCTGCAACTGGTAGGAAAACTTACCTTTCTGGGGCTATTGCTTCATCTTTTCGGAAGTATAAAAGTTCTGAAGTGAACTATTCAAAGTATCACCTGCTGGTCTTTTCACCAACTGGTTCTATGATACAATATGCTCTGCAAATGTTAACCAGTCAAGATTCAGGTGTTGGCTCTGTGTTAGCTCCTGCATATGAATCCCATCCACAGGATGATGCAAGATTAGTAGTTGAGGCTATCCAAAAATGGAATATATGTCAGAGTCATAGTCGAAGAGAGCGAGAAGATAACATAGATATATATGGTGAGAATGGAATTGCAGATGCCAATAAAATATATCCAGAGGAAGTGGGGGAGGAGTACACCATTAGTCCGAAAGTCTGGAATGGACCTATGAAAGTTAATCCTTCTCTTGAGGGGAAGAATCATTTGTATATATCAGAAGCTGAACTTCAGATGCATCACGCTCAGACTTCATTATGGGCCAAACCAGAGCCTAACTTAATGGGTGAAGAAGCTGCTTCTAGTGGCGAATTTGAGATTGAAAGGATTCCAACATGCGTGATTGAAGCTAGATCAAAAGACTTGGTTCCGATTTTTGACTATTTTCAGACTCCAAATTTGCAGCAAGCAAGGACTTCTATGGATAGCAAAAGAGATGACCAACTGTCACATAACAGTTTGCAGCCATCTGGAAATGGCAGGATTTCATCTAGGAGTGATGATGGTGATGCTGTTTCTGAGTTAAGAAATGGAATTGAAGGAACTGAATTGGATAATCATGTGGTGCCTTCTGAAACTGTGAGCTTTGTAAATAACAATGACACCTTTAAACCAAATACTCAGCATGAGATTGTAAATAATAGAAGGGAGGCTCAACTCATGTTTGTAAATAGTGACAGAAAGCTTGAAAATGAAGAATCATTTTGA 2790 0.419 MAESQEVLAIRLLVLDAKETNLKGEEENCLTALDTEKTVKNREGSWGVMIEGEFEESLIFVLWLGSILVYLVMGMRNDAQKQQLLHQGNGGGKTSGFIPSSFRALSSYLRIVSSGASTVARSAASVVASSVVDRDDVPDHDKVIWAGFDELEGEGEVIQQVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDNYANSRQLLVVCTDGFFVGGSNLQDGLATPNNGSNLNSHDQMNGNYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSSRVVAISQSTQIHCFEATTLIRAYILLTNPIVMSVPGSGGIGYGPLAVGPRWLAYSGSPVAVSNSGHVSGQHLMPSASFSGFSSNGSLLAHYAKESSKHIATGIVSLGDMGYKKLSRYCSDTNGSLQSVNSVSKGIVTINGHSTEADNIGMVIVKDIVSRNVIAQFRAHKSPISALSFDPSGTILVTASIQGHNINVFKIMPVQDNFSASDTVPSYVHLYKLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSYDDNFTIRNSALGATANHPQGWSHGSAMQKPKQKSLVVAGPPITLSVVSRIRNGANGWRGSVTGAAAAATGRKTYLSGAIASSFRKYKSSEVNYSKYHLLVFSPTGSMIQYALQMLTSQDSGVGSVLAPAYESHPQDDARLVVEAIQKWNICQSHSRREREDNIDIYGENGIADANKIYPEEVGEEYTISPKVWNGPMKVNPSLEGKNHLYISEAELQMHHAQTSLWAKPEPNLMGEEAASSGEFEIERIPTCVIEARSKDLVPIFDYFQTPNLQQARTSMDSKRDDQLSHNSLQPSGNGRISSRSDDGDAVSELRNGIEGTELDNHVVPSETVSFVNNNDTFKPNTQHEIVNNRREAQLMFVNSDRKLENEESF 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01239 929 FunFam Breast carcinoma-amplified sequence 3 368 594 - -
Vimu4g01239 929 MobiDBLite consensus disorder prediction 831 867 - -
Vimu4g01239 929 Gene3D - 159 594 IPR015943 GO:0005515
Vimu4g01239 929 SUPERFAMILY WD40 repeat-like 161 544 IPR036322 GO:0005515
Vimu4g01239 929 MobiDBLite consensus disorder prediction 844 860 - -
Vimu4g01239 929 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 89 909 IPR045142 GO:0006914
Vimu4g01239 929 SMART WD40_4 501 542 IPR001680 GO:0005515
Vimu4g01239 929 SMART WD40_4 445 485 IPR001680 GO:0005515
Vimu4g01239 929 Pfam Breast carcinoma amplified sequence 3 594 818 IPR022175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01239 Vimu-Chr4 11514827 11521566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01239 - - gmx:100784596 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01239 4 11514827 11521566 Vimu4g01239 4 11514827 11521566 ECH
Vimu4g01239 4 11514827 11521566 Vimu5g01105 5 18641410 18648804 PCT