Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01104 ATGTTGCTGCAGATATCACCCAGTTTGAGGCATGTCACTGTGCTTCCGGGAAAAGGGTTGAAGGAATTTATCAAAGTGAAGGTTGCATCAAGGAGGCTATCTTACCGGATGCTCTTCTATTCTCTCTTGTTCTTCACATTCCTTCTTAGGTGTGTGTTTGTTCTGACAGCAGTGGATAACATTGATGGAGAAAACAAGTGTTCTTCCATAGGTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGAAGAAGTCTTGAATCAAATGTCCCTGAAGTAATATACAAAATATTGGACCAACCCCTTGGAAAAGATGAATTAGAGCAAAGGACTGATATACCTCAGACTTTAGAAGAGTTCATGGTCCTAATAAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTGAGAGAAATGGTGACCCTTATGGAACAACGAACCAGAGAAGCCAAAATCCAAGAGTACTTATATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCACTGCCTTGGCTTGAAGCTGGCAAATGAGCACACCAACAATGCAGCTGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCTCTGGTTGACAACAACTACTTTCACTATGTTCTTGCCTCCGACAATGTGCTCGCTGCCTCTGTGGTTGCAAAATCACTTGTTCGAAACAGTTTGCGACCTCAGAAGGTTGTTCTGCACGTAATTACAGACAGAAAGACTTACTATCCCATGCAAGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATTGAGGTCAAGGCACTACACCACTTCGATTGGTTTACAAAGGGAAAGGTGCCTGTGCTGGAAGCAATGGAAAAAGATCAAAATGTGAGATCACAGTTTCGAGGAGGATCATCGGCTATTGTTGCAAATACTACTGAGAAGCCTAGAGCAATTGCAGCAAAGCTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGCATACATCTTCCAGAGCTGTTCTCAAGCCTTAGCAAGGTGGTCTTCCTTGACGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTAGGAACATGCAGTGGAGAAGATAAGTATGTTATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCACACCCTTTAATATCCCAAAACTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTTGATGCCTGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGGACATTACCACCTGGATTAATAGCATTCCATGGTCATGTCCACACTATCGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAGTACAAGTTTTGCTGATGTTAAGGATGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAGGCCATTGTGGACTAAATACATTGACTTCTCAGATTACTTCATAAAGAGCTGCCATATCAAGGCATTGTAA 1602 0.4257 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRCVFVLTAVDNIDGENKCSSIGCLGKKLRPKILGRSLESNVPEVIYKILDQPLGKDELEQRTDIPQTLEEFMVLIKEGGYDAKTFAIKLREMVTLMEQRTREAKIQEYLYRHVASSSIPKQLHCLGLKLANEHTNNAAARLQLPSAELVPALVDNNYFHYVLASDNVLAASVVAKSLVRNSLRPQKVVLHVITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSQFRGGSSAIVANTTEKPRAIAAKLQALSPKYNSVMNHIRIHLPELFSSLSKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVGTCSGEDKYVMSKRLKSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQESTSFADVKDAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIKAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01104 533 CDD GT8_like_1 207 519 - -
Vimu5g01104 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 203 524 IPR029044 -
Vimu5g01104 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Vimu5g01104 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Vimu5g01104 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 82 530 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01104 Vimu-Chr5 18623894 18626976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01104 1 532 Glycosyltransferase AT5G54690 79.213 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01104 K20867 - gmx:100777811 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01104 5 18623894 18626976 Vimu5g01104 5 18623894 18626976 ECH
Vimu4g01240 4 11534659 11537622 Vimu5g01104 5 18623894 18626976 PCT