Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01240 ATGCTAAGCAAGGACAATATGCAGCTGCACATATCTCCAAGTTTGAGGCATGTCACTGTGTTTCCAAGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGCGTGTCTCTTATCGGATGCTCTTCTATTTTCTCTTGTTCTTTACTTTTCTTCTTCGGTTTGTGTTTGTCTTGACAGCAGTGGATGGCATTGATGGAGAAAACAAATGCTCTACCATAGGTTGCCTAGGAAAAAAACTAGGACCAAGGATTTTGGGGAGACGGTCTGAATCAACTATCCCAGAAGTGATATACCAGACATTAGATGAACCTCTTGGCAAACATGAACTTCAGGGTAGGTTTGATATTCCACAAACCTTGGAAGAGTTCATGACTGAAATTAAGAAAGGTGGACATGATGCCAAGACATTTGCTGTTAAACTTCGAGAAATGGTGACCCTTATGGAAGAAAGGACCAGAATGGCGAAGATCCAAGAATATCTCTATCGACATGTAGCATCAAGCAGTATACCAAAACAACTTCACTGCCTTTCCTTGAGTTTGGCCAATGAACACACCAACAATGCCGCAGCACGCCTTCAACTACCCTCTGCAGAACTAGTCCCTGCCCTGGTTGACAATTCCTACTTCCATTTTGTCCTTGCCTCAGACAATGTGCTGGCTGCATCTGTGGTTGCAACATCGCTTGTTCGCAACTTTTTGAGACCTCAGAAGGTTGTTCTGCACATAATTACAGACAGGAAGACTTATTACCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTGAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTGCCTGTTCTGGAGGCTATGGAGAAGGATCAAAAGGTGAGGTCACAGTTTAGAGGGGGTTCATCAGCTATAGTTTCAAATACAACTGAGAAGCCAAAAGTTATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTATTTCCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACATCGTGGTACAAACTGACCTTTCACCTCTTTGGGACATTGAAATGAATGGAAAAGTGAATGGAGCTGTAGAAACATGTACTGGAGAAGACAAGTTTGTGATGTCAAAGAAGTTGAAAAGCTATTTGAACTTCTCCCATCCTCTTATATCCAAAAATTTTAATCCCAATGAATGTGCCTGGGCCTATGGCATGAACATTTTCGATTTGGAGGCTTGGCGGAAGACTAATATAAGCAATATTTACCATTACTGGGTTGAGCAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGAACATTACCTCCTGGATTGATAGCCTTTCATGGCTATGTCCACGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGGTATCAGGAAAATACAAGTTTTGTTGATGCTGAGAGTGCTGGTGTCGTCCATTACAATGGCAGGGCAAAGCCATGGCTAGAAATAGCTTTTCCACAACTAAGGAAATTGTGGACAAAATATGTTGACTTCTCAGATAAGTTCATCAAGAGTTGTCACATTAGGGCATCATAG 1620 0.4222 MLSKDNMQLHISPSLRHVTVFPSKGFKEFIKVKVASRRVSYRMLFYFLLFFTFLLRFVFVLTAVDGIDGENKCSTIGCLGKKLGPRILGRRSESTIPEVIYQTLDEPLGKHELQGRFDIPQTLEEFMTEIKKGGHDAKTFAVKLREMVTLMEERTRMAKIQEYLYRHVASSSIPKQLHCLSLSLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNFLRPQKVVLHIITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVSNTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCTGEDKFVMSKKLKSYLNFSHPLISKNFNPNECAWAYGMNIFDLEAWRKTNISNIYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGYVHVIDPFWHMLGLGYQENTSFVDAESAGVVHYNGRAKPWLEIAFPQLRKLWTKYVDFSDKFIKSCHIRAS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01240 539 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 118 536 IPR029993 GO:0047262
Vimu4g01240 539 Pfam Glycosyl transferase family 8 212 512 IPR002495 GO:0016757
Vimu4g01240 539 CDD GT8_like_1 213 525 - -
Vimu4g01240 539 SUPERFAMILY Nucleotide-diphospho-sugar transferases 214 536 IPR029044 -
Vimu4g01240 539 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 215 533 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01240 Vimu-Chr4 11534659 11537622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01240 7 539 Glycosyltransferase AT5G54690 78.879 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01240 K20867 - gmx:100812550 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01240 4 11534659 11537622 Vimu4g01240 4 11534659 11537622 ECH
Vimu4g01240 4 11534659 11537622 Vimu5g01104 5 18623894 18626976 PCT