Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01128 ATGATCAGATATCGTGCTATTACAAGTGCATATTACCGAGGAGCAGTTGGTGCTTTGGTTGTGTACGATGTAACTCGACACGTGACGTTTGAGAATGTTGAGAGATGGTTGAAGGAGCTTCGGGATCACACAGAAGCATATGTTGTGGTGATGCTGGTGGGAAACAAGGCAGATCTTCGACATTTGCGTGCAGTGTCAACTGATGAAGCCAAAGAATTTGCAGAAAAAGAGAAGATATTCTTCATGGAAACCTCAGCCCTTGAGTCCTTGAATGTGGACAGTGCTTTTGTAGAAGTGCTGACTCAGATATACAATGTTGTGAGTAGGAAAACACTTGAGACAGTGGATGAATCTCATGCAACATCCTTGCCCAAAGGGGAAACCATTGTTCTTGGAACCAAAGAAGATGTCTCAGCTGTTAAAAAGAGTGGATGCTGTTCCACATAG 447 0.434 MIRYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGNKADLRHLRAVSTDEAKEFAEKEKIFFMETSALESLNVDSAFVEVLTQIYNVVSRKTLETVDESHATSLPKGETIVLGTKEDVSAVKKSGCCST 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01128 148 ProSiteProfiles small GTPase Ras family profile. 1 131 IPR001806 GO:0003924|GO:0005525
Vimu4g01128 148 SMART rho_sub_3 6 106 IPR001806 GO:0003924|GO:0005525
Vimu4g01128 148 PRINTS Transforming protein P21 ras signature 81 103 - -
Vimu4g01128 148 PRINTS Transforming protein P21 ras signature 46 59 - -
Vimu4g01128 148 Pfam Ras family 3 104 IPR001806 GO:0003924|GO:0005525
Vimu4g01128 148 FunFam Ras-related protein Rab-1B 1 109 - -
Vimu4g01128 148 PANTHER DRAB11-RELATED 3 128 - -
Vimu4g01128 148 ProSiteProfiles small GTPase Rab1 family profile. 1 146 - -
Vimu4g01128 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 111 IPR027417 -
Vimu4g01128 148 NCBIfam small GTP-binding protein domain 2 99 IPR005225 GO:0005525
Vimu4g01128 148 Gene3D - 2 139 IPR027417 -
Vimu4g01128 148 SMART rab_sub_5 3 106 - -
Vimu4g01128 148 SMART ras_sub_4 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01128 Vimu-Chr4 9749820 9751165 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01128 K07904 - gmx:100305599 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01128 4 9749820 9751165 Vimu2g00720 2 4380374 4381289 ECH
Vimu4g01128 4 9749820 9751165 Vimu4g01128 4 9749820 9751165 ECH