Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00720 ATGGGGGCGTATAGAGCTGATGAGGATTACGATTACCTATTCAAGATTGTTCTGATTGGGGACTCTGGCGTGGGAAAATCCAACATTTTGTCAAGGTTCACCAAGAATGAATTCTGCGTTCTATCAAAGTCTACCATTGGGGTTGAGTTTGCAACCAGAAGCATTAGGGTGGATGATAAGGTTCTCAAAGCTCAGATTTGGGACACTGCTGGCCAGGAAAGGTACCGATCGATCACCAGTGCATATTATCGAGGAGCTGTTGGTGCATTGTTAGTATATGATGTTACCCGGCATTCTACATTTGAGAATGTGGAGAGATGGTTCAAGGAGCTCAGAGATCACACGGATAACAAAATTGTTGTTATGGTTGTTGGAAACAAAGCAGATTTGAACCATCTGCGAGCAGTTTCCGCCGAAGATGCTAGAACTTTTGCAGCACGGGAAAGAACTTTTTTCATGGAAACCTCTGCCCTCGACTCCACGAACGTTGAAAATGCCTTCACAGAACTGCTCACACAGATCTACCATGTTGTAAGCACGAAAGCCCTTGAAATTGGCGATGATCCGGCCGCATTACCAAAAGGACAGACCATAAATGTTGGGTCTCGTTATTATTATGTATCAGATGAGAAGCAGAATGGATGTTGTTCTGCTTGA 657 0.4414 MGAYRADEDYDYLFKIVLIGDSGVGKSNILSRFTKNEFCVLSKSTIGVEFATRSIRVDDKVLKAQIWDTAGQERYRSITSAYYRGAVGALLVYDVTRHSTFENVERWFKELRDHTDNKIVVMVVGNKADLNHLRAVSAEDARTFAARERTFFMETSALDSTNVENAFTELLTQIYHVVSTKALEIGDDPAALPKGQTINVGSRYYYVSDEKQNGCCSA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00720 218 SMART ran_sub_2 19 215 - -
Vimu2g00720 218 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Vimu2g00720 218 SMART arf_sub_2 1 179 - -
Vimu2g00720 218 SMART ras_sub_4 11 177 - -
Vimu2g00720 218 ProSiteProfiles small GTPase Ras family profile. 8 218 IPR001806 GO:0003924|GO:0005525
Vimu2g00720 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Vimu2g00720 218 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Vimu2g00720 218 PRINTS Transforming protein P21 ras signature 117 130 - -
Vimu2g00720 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Vimu2g00720 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Vimu2g00720 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Vimu2g00720 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Vimu2g00720 218 SMART rab_sub_5 14 177 - -
Vimu2g00720 218 FunFam ras-related protein RABA1f 6 216 - -
Vimu2g00720 218 NCBIfam small GTP-binding protein domain 12 169 IPR005225 GO:0005525
Vimu2g00720 218 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Vimu2g00720 218 PANTHER DRAB11-RELATED 7 201 - -
Vimu2g00720 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Vimu2g00720 218 Gene3D - 6 216 IPR027417 -
Vimu2g00720 218 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00720 Vimu-Chr2 4380374 4381289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00720 15 217 EF-hand Containing Proteins AT5G27540 27.442 1.40e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00720 K07904 - gmx:100805995 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00720 2 4380374 4381289 Vimu2g00720 2 4380374 4381289 ECH
Vimu4g01128 4 9749820 9751165 Vimu2g00720 2 4380374 4381289 ECH