Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01065 ATGGCGTATGCCCCTGCGAGACCAATGTGTACAGCCATGGACTCTGATGAAGTATTCGTGAGCTTTTCCGACACCGTTTTTGGCTTTTGGGAGGATCTCCAGGAGCCGCCGGAAAATTCAACCGACTCCGGCAAACTTCTTGGTGGCGACGATGAGAAACTCTGTTCTGTGGAAAACGATTACAAAGCTTTCTGGGAAAAACAATACCTCCTTCTCCAGGCAACCTTATGCGGGAGTTGCTCGATTGAGACAAGAGTTCGGCAAGCTACGAAGGAAGTTCTAACAGAGTTAAATATGTGGGATATGCAGTGCCTTTGCCGGAGAGAAGTGAATGTTAAGAGCTGTAGGAATTGCTTGAGGGGGGAAATATGTGATCGTTTGTTGAACCTTGGTTACAACTCTGCTCTTTGCACGTCTAAATGGAGAACTTCCTCGGAAATCCAAATATCAGGGGAGCATACTTATCTGGAAGTGAAGGATAACTCAAACACTAAAAGAGAGGTAAAAGTGGTAATTGAATTGAATTTTCGAGCAGAATTTGAGATGGCACGTGCTAGTGAAGAATACAACAAATTAATGAACAGGTTACCTGAGGTATTTGTGGGAAAAGCAGAGAGGTTACAAGTCATAATTAATATTATGTGCTCAGCTGCAAAAAAATGCATGAAGGAAAAGAAAATGCACTTAGGACCTTGGAGAAAACTAAGGTACATGCAAGCAAAGTGGCGTGGCATGACAGATAGAAACATAACAGTGCCACTTCCCACTGTTTACAGTTCAAGACCACGAAAATATAAGGCTTCGATGCTCACTTGCGATTTACTAGAAAATAGGCTTCACTGTGCTCATGCATCTATGATTGTGGCCGCCTTTGTTGTGAAAACAAACAGGTTTAATATGAGGACGGTGAATAAGTTAATAGAAACTACTACTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATTAAGACTCTTTCTTCCAGAGTGAAGTCATCTGAGCTAGTGTACCATTCACCAAGAGCTCCTCAACCACCGTTAACCTCCATGGAATCATCTTCCACCGCTGCTGCAGAATCACAAGCAACCTCCTACACTGCTTCTGTTTCGATTTTCAACATCTTCCGCTGCGTCGTAACTTACCTGGAGCAACGCCATCAAGTGGTATTAGAGTCAGGTTACTCACGGTGCAGTGTGGTTGTTCCAGCTAAAGCAACTGATATTGCCAAAGGTCAAGTTACATGTTTTTGTCCTCTGCTGGCTGTTGAAACACGTCATCAAGTGGTATCAGAGCCTGGTTGCTCACGGTGCACATCTTCTTCATCATTTCATTTTGTCAAATCTGATTCTGGTCCGAATGATAGCATCTTCCGCTGCCTACAATCCACATCTGTGGTTGGTCCTGTCCTACAAGGTATGTCTCACAGCGGGTCAAACAACAGTTCTAGAGAGGGGATATATAGTGATAGTACCTGGACCTCAATCTCTTCTGACGCGTCACCGTTAAAAGCTTTGGAGGTGGTAATGGAGCTAGTAACTGAGAATAAGAAAGATAATCTTAGGGAGAATGCTTAG 1608 0.4185 MAYAPARPMCTAMDSDEVFVSFSDTVFGFWEDLQEPPENSTDSGKLLGGDDEKLCSVENDYKAFWEKQYLLLQATLCGSCSIETRVRQATKEVLTELNMWDMQCLCRREVNVKSCRNCLRGEICDRLLNLGYNSALCTSKWRTSSEIQISGEHTYLEVKDNSNTKREVKVVIELNFRAEFEMARASEEYNKLMNRLPEVFVGKAERLQVIINIMCSAAKKCMKEKKMHLGPWRKLRYMQAKWRGMTDRNITVPLPTVYSSRPRKYKASMLTCDLLENRLHCAHASMIVAAFVVKTNRFNMRTVNKLIETTTTIIIIIIIIIIIIIIIIIIIIIIKTLSSRVKSSELVYHSPRAPQPPLTSMESSSTAAAESQATSYTASVSIFNIFRCVVTYLEQRHQVVLESGYSRCSVVVPAKATDIAKGQVTCFCPLLAVETRHQVVSEPGCSRCTSSSSFHFVKSDSGPNDSIFRCLQSTSVVGPVLQGMSHSGSNNSSREGIYSDSTWTSISSDASPLKALEVVMELVTENKKDNLRENA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01065 535 NCBIfam uncharacterized plant-specific domain TIGR01615 122 249 IPR006502 -
Vimu4g01065 535 Pfam PDDEXK-like family of unknown function 24 248 IPR006502 -
Vimu4g01065 535 PANTHER OS03G0796600 PROTEIN 21 363 IPR006502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01065 Vimu-Chr4 8989552 8997606 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01065 - - tpra:123916511 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01065 4 8989552 8997606 Vimu4g01065 4 8989552 8997606 ECH
Vimu4g01065 4 8989552 8997606 Vimu5g01424 5 24991857 24993219 PCT