Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00987 ATGGCTTCTCAAACCTCCGACGGCAATTTCATGAGGAATTTCTGGATCCCGAACCACGTGCTGGTGCCGGAATCCGCGGTTGAAAGTAGCGACGTCGATGTCGACGGACCTGAGTGTCCGGTGCTCGTTTTCGTTAACTCCAAGAGTGGTGGTCAGCTGGGAGGAGACCTCTTGAAAACGTATCGTGCGCTTCTTAAAGAAAGTCAGGTTTTCGACTTGGGGGAAGAGGCTCCTGATAAGGTTCTGAGCAGGATCTATGCGAATTTGGAAAATCTCAAGCTTCAGGGCGATCGAATTGCCATAAAGGTCATGGAGAAATTGAGATTAATTGTTGCTGGGGGTGATGGAACAGCTGGCTGGCTACTTGGAGTTGTCTGTGATCTCCAACTGTCTCGTCCGCCACCCATTGCCACGGTTCCATTGGGCACAGGGAATAATCTGCCGTTTGCATTTGGTTGGGGAAAGAAAAACCCAGGAACAGATGAACAGTCGGTCAAGTCATTTCTGAATCAAGTAATGAAAGCTAAGGACATGAAAATAGACAACTGGCACATTCTTATGAGAATGAGGATTCCAGAAAAAGGTGCCTGTGATCCAATTCCACCCCTTGAGCTACCACACTCTTTGCATGCCTTCCATCGTGTATCTGAGGCAGATGAGCTTAGTATGGAAGGCTGCCATACTTTTCGTGGGGGGTTTTGGAATTACTTCAGCATGGGAATGGATGCTCAAATTTCGTATGCATTTCATTCTGAACGGAAATTGCATCCTGAAAAGTTCAAAAATCAGTTGGTCAATCAGAGTACTTATGCTAAGCTTGGATGCACACAAGGATGGTTTTTTGCTCCTCTGTTCCACCCTCCTTCCAGGTCAGTTTGTGTAGATCTGTCATTGGTTGGAGAAAGGTTTCCTATGTTTTTATGGGTTGTTTTTCTTCCAAGTTCTGGCAAGTTGTACAAGCACATGCCCAAGCCACACACAAAACATCAATTATTCATAGATCCATCTAAGCATTGTTTTCATATATATTTGCTACTTAACCACTCAAGTAAATGCATTTTGATCATTGAATGCAGAAACATAGCACATCTTGCAAAAGTAAAAATCATGAAGAGGCATGGTCATTGGGAAGACCTGTCGATTCCATCCAGGTCCATTGTATGCCTCAACTTGCCTAGCTTTTCTGGTGGATTGAATCCATGGGGTACACCGAACAAGCACAAGAGGCGTGATAGAGATTTGACACCTCCATATGTAGATGATGGCCTTTTAGAAGTGGTTGGCTTTAGAGATGCTTGGCATGGGCTTGTTTTGCTTTCTCCAAATGGACATGGAACTCGCCTTGCTCAGGCACACAGAATCCGATTCGAGTTTCACAAAGGTGCAGCAGAACATACATTCATGAGGATTGATGGGGAACCTTGGAAGCAACCCCTCCCAGTTGACGATGATACTGTTTTGGTGGAAATTTCTCACCATGGCCAGGTTAACATGCTCGCAACTCATGAATCCAAGTCTAAAAGTGTGAATGATCCGTCATCTCCACACCACCATGACGTGGAAGAAGATGATAGTGATGACGAAGAATCTAAAGCAGATGAATTCCGGAAGTTTGGTGCGGCTGAAACATTCAAGATCCCAGATGAGGTAGACCTTGCTCATCTTAGTTAG 1671 0.45 MASQTSDGNFMRNFWIPNHVLVPESAVESSDVDVDGPECPVLVFVNSKSGGQLGGDLLKTYRALLKESQVFDLGEEAPDKVLSRIYANLENLKLQGDRIAIKVMEKLRLIVAGGDGTAGWLLGVVCDLQLSRPPPIATVPLGTGNNLPFAFGWGKKNPGTDEQSVKSFLNQVMKAKDMKIDNWHILMRMRIPEKGACDPIPPLELPHSLHAFHRVSEADELSMEGCHTFRGGFWNYFSMGMDAQISYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFAPLFHPPSRSVCVDLSLVGERFPMFLWVVFLPSSGKLYKHMPKPHTKHQLFIDPSKHCFHIYLLLNHSSKCILIIECRNIAHLAKVKIMKRHGHWEDLSIPSRSIVCLNLPSFSGGLNPWGTPNKHKRRDRDLTPPYVDDGLLEVVGFRDAWHGLVLLSPNGHGTRLAQAHRIRFEFHKGAAEHTFMRIDGEPWKQPLPVDDDTVLVEISHHGQVNMLATHESKSKSVNDPSSPHHHDVEEDDSDDEESKADEFRKFGAAETFKIPDEVDLAHLS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00987 556 Pfam Diacylglycerol kinase accessory domain 233 279 IPR000756 GO:0004143|GO:0007205
Vimu4g00987 556 Pfam Diacylglycerol kinase accessory domain 367 474 IPR000756 GO:0004143|GO:0007205
Vimu4g00987 556 SMART dagk_c4b_2 235 474 IPR000756 GO:0004143|GO:0007205
Vimu4g00987 556 FunFam Diacylglycerol kinase 39 182 - -
Vimu4g00987 556 Pfam Diacylglycerol kinase catalytic domain 40 165 IPR001206 GO:0016301
Vimu4g00987 556 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 36 189 IPR001206 GO:0016301
Vimu4g00987 556 SMART dagk_c4a_7 40 183 IPR001206 GO:0016301
Vimu4g00987 556 Gene3D - 39 186 IPR017438 -
Vimu4g00987 556 PANTHER DIACYLGLYCEROL KINASE 16 503 IPR037607 GO:0004143|GO:0007165
Vimu4g00987 556 MobiDBLite consensus disorder prediction 501 538 - -
Vimu4g00987 556 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 39 481 IPR016064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00987 Vimu-Chr4 8295214 8301069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00987 359 549 Acyl Lipid Metabolism Gene Families AT2G20900 75.510 1.66e-99 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00987 K00901 - atri:130805747 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00987 4 8295214 8301069 Vimu4g00987 4 8295214 8301069 ECH
Vimu4g00987 4 8295214 8301069 Vimu5g01516 5 26362760 26368711 PCT