Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00895 ATGGGTTCGGTGGAGACGGAACCGCTCTTGTCAGGGTTTTCTGCAGGAGAAGAAACTCCTCGCTCAAATTCCAAGCACGTGTCCGATGGGGAACTTGAGAGAATTCTTACAGACGATACCCTCCCTTTCCTCCGCCGTCTCGGGGCCGCCTTTTGGGTGGAGTTCAAGCTCCTCTTCTTCCTCGCTGCCCCTGCTGTGTTTGTCTACGTCGTCAACTACGTCATGTCCATGTCCACGCAAATGTTCTCCGGTCACCTCGGTAATCTTGAACTCGCCGCCTCCTCCCTCGGCAACACCGGCATCCAACTCTTAGCTTATGGTCTCATGTTAGGCATGGGGAGTGCAGTTGAGACGCTGTGCGGACAAGCATACGGTGCGCGGAAGTTTGGGATGCTAGGTATATACATGCAGCGCTCAACGGTGCTTCTTTCATTGGCCGGCATCCTTATGACCGTCGTATACGTGTTAAGTGAGCCAATTTTACTCTTCCTCGGCGAGTCCGCGGAAATTGCGGCGGCAGCGGCGCTTTTCGTGTACGGTTTGATTCCTCAGATCTTCGCATACGCGGTGAACTTCCCCATCCAGAAGTTTATGCAGGCGCAGAGCATAGTAGCGCCGAGCGCATACATCTCAGGGGGGGCGTTAGTGCTGCATCTATTGCTGAGCTGGTTGGTGGTGTACAAGATTGGGTTGGGACTCTTGGGAGCGTCACTGACGCTGAGCCTGTCGTGGTGGATCATCGTGATTGCTCAGTTCGTGTACATCGTGAAAAGCCCGAAGTGCAAGGAGACGTGGCAGGGGTTCACGTTGCAGGCATTTTCCGGGTTACCGTCGTTCTTCAAGCTGTCTGCAGCTTCCGCCGTTATGCTGTGTTTGGAGACGTGGTATTTTCAAATTCTGGTGCTGCTCGCAGGCCTGCTTCCTCAACCTGAATTGGCCCTTGATTCGCTATCAGTCTGTACTACACTTTCTGGCTGGTTTAACATGATCTCCGTAGGATTCCAAGCTGCCGCAAGCGTGAGGGTGGGTAACGAACTCGGAGCAGGAAATCCAAAATCAGCGTCCTTTTCGGTGGTGGTGGTGACATCGATTTCTTTCATCATATCAGCTATTATAGCAATAGTGATTCTTGCACTTAGGGATGTCATCAGCTATGCCTTCACAGGGGGTGAAGTGGTTGCTGCTGCAGTTTCAGATCTTTGCCCACTGCTTGCTCTTTGTATTGTCCTCAATGGCGTCCAGCCCGTCTTATCTGGGGTGGCTGTTGGATGTGGTTGGCAAGCTTTCGTGGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCTTACCAGTGGGAGCGGTTCTAGGCTTTTATTTCGACTACGGTGCCAAGGGAATATGGCTGGGAATGCTTGGTGGCACAGCCATGCAAACAGTGATTCTATTGTGGGTTACATTTAGAACGAACTGGAATAAGGAGGTGGAGGAAGCAGCCAGGAGGTTGAAAATATGGGAGGACAAGAAGGAGGAAGCACTAAACTGA 1524 0.5184 MGSVETEPLLSGFSAGEETPRSNSKHVSDGELERILTDDTLPFLRRLGAAFWVEFKLLFFLAAPAVFVYVVNYVMSMSTQMFSGHLGNLELAASSLGNTGIQLLAYGLMLGMGSAVETLCGQAYGARKFGMLGIYMQRSTVLLSLAGILMTVVYVLSEPILLFLGESAEIAAAAALFVYGLIPQIFAYAVNFPIQKFMQAQSIVAPSAYISGGALVLHLLLSWLVVYKIGLGLLGASLTLSLSWWIIVIAQFVYIVKSPKCKETWQGFTLQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSVCTTLSGWFNMISVGFQAAASVRVGNELGAGNPKSASFSVVVVTSISFIISAIIAIVILALRDVISYAFTGGEVVAAAVSDLCPLLALCIVLNGVQPVLSGVAVGCGWQAFVAYVNVGCYYGVGLPVGAVLGFYFDYGAKGIWLGMLGGTAMQTVILLWVTFRTNWNKEVEEAARRLKIWEDKKEEALN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00895 507 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
Vimu4g00895 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 49 484 - -
Vimu4g00895 507 MobiDBLite consensus disorder prediction 1 29 - -
Vimu4g00895 507 Coils Coil 481 501 - -
Vimu4g00895 507 NCBIfam MATE family efflux transporter 64 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g00895 507 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g00895 507 Pfam MatE 286 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00895 Vimu-Chr4 7344187 7350167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00895 K03327 - gmx:100795338 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00895 4 7344187 7350167 Vimu4g00895 4 7344187 7350167 ECH
Vimu4g00895 4 7344187 7350167 Vimu5g01595 5 27468284 27469021 PCT