Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00821 ATGACTCTGCCAACGTCATGGAACATGATTATTCTCATTGGAACAACAGCAAAAATGGAGAACCCAGGTTGCACTTGTACATGGCGAACCTTGTACGAGAAACCACAAACCATGTTAGTTAACTTCAAAAACATGGTTGTAAAACTAGGAAAAGATGACCCCAGAAGGATTACTCACTCCCTGAAGTTCGGATTCGCACTGGTATTAATCTCTGTTTTGCAGTATTTTTGTCCCTCCTTCTATGTTCTTGGTGACAACATAATATGGGCCGTTATCACTGTCATATTTGTCCTAGAATTTTCAGTGGGTGCAACACTCGGAAAAGGTTTAAACAGGGTGTTGGCAACGACATTTGCTGGTGGTCTTGCTGTTGCACTCCGCGAAATAGCGAGTTTTTTTGGAGATATAGGAAAGGTCGTAATGATTACGGTCTCTGTATTTTTCGTAGCTGGAACGGTGACGTTTATGAGATTTTCCCCGCGACTGAAGGCGAAGTATGATTACGGGATGATTGTTTTTATTTTGACCTTTTGTTTAGTAGCACTTTCGGAGACCAGTGAGAATGAACTATTGGAAGTTGCACAAGAGAGGTTATTAACGATCATAATTGGGAGTTGCATAGCTATTACGGTATGTATTTGTATATGCCCCGTTTGGATTGGACAGGATCTTCACAATCAAATTGCTTCCAATGTTGTAAAGATTGCCGACTTTTTGGAAGGATTTAGAGATGAATACTTCAACAATTTAGGTAAGACAGCAGAAGCTGAGGATGATAAGTCATTTCTCCACAGATATGAAAGTATCCTCTCTTCAAAAACTAATGAAGAAACAATGGCTGTTTTGGCAAGATGGGAACCTCGTCATGGAAGGTTCAGATTTCGCCATCCATGGAAGCAATACTTGAAGCTCGGAAACCAAATTCGGTTGTGTGCTTACAAAATTAAAGCTCTCAGTGTCTTCCTCTTCCGTTCTGATCAAACCCCATATGAAATTCGAAGCAGGATCGAAGAACCATGTGCAAACATCATAATGGAATCTGGGAAAGCTCTTAAGGAATCATCATTGATGCTCAAACAGTTTGCAAAGGCAGGAATGCCAAATCCCCATGTGGCGAATGCTAAAGATGCTGCTGAATCTCTTAAATCAGTTCTTAGAACAAACCCGTGGGAAGGAGCTGATCATCTGCAGATAATACCAGCAGCTACAGTGGCATCACTTCTAATTGATACAGTTTACTGTGTTGAGAAAATTTGTGAAGCTGTTGAGGAACTTGCAAACCTTGCAAATTTTGAGCCCTCTGAGGTACTCCATCGAGGAACAGTTCAACCTATTCCTGATACTGATGGTGCGGTTCATGTCATCACCATTGCTGAATGA 1380 0.4116 MTLPTSWNMIILIGTTAKMENPGCTCTWRTLYEKPQTMLVNFKNMVVKLGKDDPRRITHSLKFGFALVLISVLQYFCPSFYVLGDNIIWAVITVIFVLEFSVGATLGKGLNRVLATTFAGGLAVALREIASFFGDIGKVVMITVSVFFVAGTVTFMRFSPRLKAKYDYGMIVFILTFCLVALSETSENELLEVAQERLLTIIIGSCIAITVCICICPVWIGQDLHNQIASNVVKIADFLEGFRDEYFNNLGKTAEAEDDKSFLHRYESILSSKTNEETMAVLARWEPRHGRFRFRHPWKQYLKLGNQIRLCAYKIKALSVFLFRSDQTPYEIRSRIEEPCANIIMESGKALKESSLMLKQFAKAGMPNPHVANAKDAAESLKSVLRTNPWEGADHLQIIPAATVASLLIDTVYCVEKICEAVEELANLANFEPSEVLHRGTVQPIPDTDGAVHVITIAE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00821 459 Pfam Aluminium activated malate transporter 48 426 IPR020966 GO:0015743
Vimu4g00821 459 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 39 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00821 Vimu-Chr4 6478019 6480349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00821 48 457 Miscellaneous Gene Families AT1G08440 44.019 3.90e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00821 K25841 - gmx:100786663 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00821 4 6478019 6480349 Vimu4g00821 4 6478019 6480349 ECH
Vimu4g00821 4 6478019 6480349 Vimu5g01672 5 28422298 28424608 PCT