Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00748 ATGATAGCAATGGGGGAATTCAAACACTTTGTAATTGTTAAGTTCAAGGAAGGTGTGGCAGTTGATGAGCTCACTAAAGGGATGGAGAAGTTGGTCTCAGAGATTGATGCTGTCAAGTCCTTTGAATGGGGAAGGGACATTGAAAGCTTAGATGTGCTGAGACAAGGTTTCACTCATGCCTTTTTAATGACATTCAACAAGAAAGAAGACTTTGCTGCGTTTCAAAGCCATCCAAATCATGTGGAGTTCTCCACAAAATTTTCAGCAGCAATTGAGAACATTGTGCTTCTGGATTTCCCATCTACTCTTGTCAAGGCCCCAGCATGA 327 0.419 MIAMGEFKHFVIVKFKEGVAVDELTKGMEKLVSEIDAVKSFEWGRDIESLDVLRQGFTHAFLMTFNKKEDFAAFQSHPNHVEFSTKFSAAIENIVLLDFPSTLVKAPA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00748 108 Gene3D - 3 108 - -
Vimu4g00748 108 ProSiteProfiles Stress-response A/B barrel domain profile. 7 99 IPR013097 -
Vimu4g00748 108 SMART Dabb_2 7 101 IPR013097 -
Vimu4g00748 108 Pfam Stress responsive A/B Barrel Domain 8 100 IPR013097 -
Vimu4g00748 108 PANTHER - 5 102 IPR044662 -
Vimu4g00748 108 SUPERFAMILY Dimeric alpha+beta barrel 4 101 IPR011008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00748 Vimu-Chr4 5868816 5869462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00748 - - gmx:100306664 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00748 4 5868816 5869462 Vimu4g00748 4 5868816 5869462 ECH
Vimu4g00748 4 5868816 5869462 Vimu5g01781 5 29566461 29567106 PCT