Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00643 ATGATGGGTGTTAGAGGCGTCAAGTTCTTATTGGTGTTTGAGATGTTTCTTTCCAATAGGACTCTGACCGATTGTCCCAATTTTCTTCTCAAAGAATGGCTGGGAGCGAATTGCACATGCTTGCTCTTTGCCTATCCTCTAGAGCAATGCTATATTGGTGTCAGTCAGGCGCGCGTTTACACCATCAACCTTTCATCCATTTTGTTCAGTGTGGGACATAGAACCTGTTCCCTCTGTGTGAGAAAAAGAGAGATGGAGAAAGAAACAGAGATGAAGCAATCCAAGTTCAAGAGGATTTGTGTCTTCTGTGGCAGTAGTCCAGGGAACAAAACTACTTACAAGGACGCTGCTATTGAGCTTGGAAGGGAATTGGTTCAGAAAACTAGAGCTATTCTATTCACACATATACTTGTATTGTTTGGTACTGAAAAGGTGTCAAGAAACATCGATCTAGTATATGGAGGGGGCAGCATTGGTTTGATGGGGTTGATTTCTCAGGCTGTTTACGAAGGTGGTCGCCATGTAATCGGAGTTATTCCCAAGACACTTATGCCAAGAGAGATTCTCATGGCATTTGTGGTTCTGTTAGCATACCATCTTAATTGGTATCATAGAGAAACAAAAGGGTGGTCATATGATTTCCAACTGAGCCCACTTCTCTGCCAACACTGCAACAGTCATCATTGCACCGCTCCCCTTCTCCAACTTCCTCATATTCCGTGGCATGCATTGTTTCTTGTACTCACTGGAGAAACAGTGGGGGAAGTGAAGGCAGTAGCAGACATGCATCAAAGAAAAGCAGAGATGGCCAAACGTTCTGATGCCTTTATTGCCTTACCTGGTGGTTATGGGACACTTGAGGAACTCCTTGAAGTGATAACATGGGCTCAACTTGGCATTCATGATAAACCGGTGGGATTGCTTAATGTTGATGGATACTACAATACCTTTTTGTCTTTCATTGACAAAGCAGTGGAAGAAGGGTTCATCAGCCCCACTGCACGCCATATAATTGTATCAGCACCAACACCAAAAGAACTTGTCAAAGAGATGGAGGAGTATTTCCCACAACATGAAAGAGTTGTCTCCAAGGTAAGCTGGGAGCGTGAACAACTACATTAG 1122 0.4367 MMGVRGVKFLLVFEMFLSNRTLTDCPNFLLKEWLGANCTCLLFAYPLEQCYIGVSQARVYTINLSSILFSVGHRTCSLCVRKREMEKETEMKQSKFKRICVFCGSSPGNKTTYKDAAIELGRELVQKTRAILFTHILVLFGTEKVSRNIDLVYGGGSIGLMGLISQAVYEGGRHVIGVIPKTLMPREILMAFVVLLAYHLNWYHRETKGWSYDFQLSPLLCQHCNSHHCTAPLLQLPHIPWHALFLVLTGETVGEVKAVADMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNTFLSFIDKAVEEGFISPTARHIIVSAPTPKELVKEMEEYFPQHERVVSKVSWEREQLH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00643 373 PANTHER LOG FAMILY PROTEIN YJL055W 85 372 - -
Vimu4g00643 373 SUPERFAMILY MCP/YpsA-like 97 354 - -
Vimu4g00643 373 Pfam Possible lysine decarboxylase 161 351 IPR031100 -
Vimu4g00643 373 NCBIfam Rossman fold protein, TIGR00730 family 251 354 IPR005269 GO:0009691|GO:0016787
Vimu4g00643 373 Gene3D - 95 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00643 Vimu-Chr4 4861322 4866041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00643 K22522 - gmx:100811156 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00643 4 4861322 4866041 Vimu4g00643 4 4861322 4866041 ECH
Vimu4g00643 4 4861322 4866041 Vimu5g01910 5 30994055 30997528 PCT