Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00635 ATGAACTTATTATTCTCCTTTTTGGAGCCTAATCGCTCACATAGTGCCTTGTTAGCAGGCTACTTTAGTAAGGTTGTTGTTTGCCTAATGATTCGAAAGACAGTTCCACTGATGAATTACGTTCAAGTCCATCAGAATGTTTTTCGTCAACTGGTTGATTTGATAGGAATTACATCCATTATGGAGGTTTTGGTTCGATTAGTAGGTGCTGATGACCATATGTATCACAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACTTGCTTGAGATGATTATTGATAAATTGAGTCCATCTTGTCCTCCCGAAGTTCATGCCAACGCTGCTGAAACATTGTGCACAATAACTAGAAATCCCTCATCTACTCTAGCAATTAAACTTTCAAGTCCAAGTTATGTTGAAAAACTATTGGATCACGCACTGGAAGATTCACAGTCAAAGTCTAGCCTTGTGAATTCACTTTCAGTGTGTGTTTCTTTGTTGGATCCCAAAAGATCTGCTATATCATCTCCCCTTTTTCATTCCTTTCGAAGTCAACACATGTATGAGCCACCAATTCCTGTAAACCCACACACTATTGGTGCAATGCTACCAAAACTTGGTGAATTGCTTATTCTTCTGAATGTATCATCCGATGAAAAAGTTTTGCCCACAACATATGGAGAACTGAGACCTCCACTTGGGAAGCATCGATTGAAGATTGTTGAGTTCATTGCCGTCCTTCTGAAAACCGGAAATGAAGTGGCAGAAAAAGACATGGTCAATTCAGGAACTATTCAACGAGTCATTGACCTTTTCTTTGAGTATCCATATAATAACTCATTACACCATCATGTAGAAAGTATCATATTATCATGTTTGGAGAGTAAAGCTGATTCCATTGTTGATCATCTTCTTCGGGAGTGTAACTTAATTGGAAGATTTCTCCAAGCAGATAAACATTCTATTCTATCTGCTGACAAAAATACGCCAACTGTACTTGCTGCTGGAAAACAGGCACCACGGGCAGGGAACATTGGGCATATTACTCGTATTGCTAACAAACTTGTTCACCTGGCACATAGTCGAAGCCTCATACTAACATGTCTTCAGGAAAATAGTGAGTGGAGTGATTGGCAAACATCAGTTCTTCAGGAGCGTAACGTGGTTGAGAATGTTCACCGTTGGGCTTGTGGACGTCCGACTGCTTTGCAAGATAGGATGAGGGATAGTGATGACGATGACCTTCATGACAGGGACTATGATGTTGCAGCTTTAGCAAATAATTTGAGCCAGGCTTTTAGATATAAAATTTATGGGAATGAGGATAATGAGGAGGAACGTGGCAACGGTGATAGAGAGGATGAGGTAGATGTCTACTTTGATGATGACTCTGCTCAGGTAGTCATATCAAACCTCAGACTCAGTGATGATCAAGGGAGTAGTCTTTTCACAAACTCCAACTGGTTTGCATTCCAAGATGACAGAATTGGTGATGCAACTGAGGGCACAACATCATCTGAGATGATGGATGAGATAAACATGAACGGTGCTGCAAATGGTGGTAACAGTAGTGATGATGAGGTAGTGGTTGGAGAGGATGAAGAATTGGCTGAAAGCACCAATAATCTCAATGGTACATCTAACTCAAGCACAAACTTAAATGGGGTAACTGGTAGTGATTCCATGAATGGGGACGCCTTGAACTTCGAAAGCAAAAAGGAAAGTGCTTCACATGATATGGGTTTCTTCAGGTTTGAGTCGGACAATGAAGAATTGTTTGGGGACAGGCCTTTGCCAGAGTGGGTGGGATGGGGTGAGCCTTTAGATGTGCAAGATGCTGGCTCAAGCACGAATCCATTTGTGGACCATGATTCTTCTGGTAACAACCTTTCTACCAAACCTCAAATAGGTAACCTAAATCCTAGTTCTCCAAATGGGGACTCTGTTCCTTCAAACAGGTCACCAACCCTTAAAGATTCAATTGATGGGAGTATTGACTCGAGTCAAAGATCAATAGCAGTACCATCACTCTTTGAAGAAGATGTTGAATTTGTAGGTGTAGAATTAGAAGGTACTGAGAAGGCTATGGAACAGGCTTTGAAAGAAGGGATAGTTGGAGAGGCAGGACCATTGAAAAGAAACATGGTTTCTAAAGTGCCAGAAAAAGAAAGTTCTGATGAGGGTGGTCCTGGAATAAAGGAATTCAATGATGCAAATTACTGGAGGGTTGACCAGGAAGTTGCTGTTCTGGAGTGA 2244 0.4118 MNLLFSFLEPNRSHSALLAGYFSKVVVCLMIRKTVPLMNYVQVHQNVFRQLVDLIGITSIMEVLVRLVGADDHMYHNFIDVMQWLAESNLLEMIIDKLSPSCPPEVHANAAETLCTITRNPSSTLAIKLSSPSYVEKLLDHALEDSQSKSSLVNSLSVCVSLLDPKRSAISSPLFHSFRSQHMYEPPIPVNPHTIGAMLPKLGELLILLNVSSDEKVLPTTYGELRPPLGKHRLKIVEFIAVLLKTGNEVAEKDMVNSGTIQRVIDLFFEYPYNNSLHHHVESIILSCLESKADSIVDHLLRECNLIGRFLQADKHSILSADKNTPTVLAAGKQAPRAGNIGHITRIANKLVHLAHSRSLILTCLQENSEWSDWQTSVLQERNVVENVHRWACGRPTALQDRMRDSDDDDLHDRDYDVAALANNLSQAFRYKIYGNEDNEEERGNGDREDEVDVYFDDDSAQVVISNLRLSDDQGSSLFTNSNWFAFQDDRIGDATEGTTSSEMMDEINMNGAANGGNSSDDEVVVGEDEELAESTNNLNGTSNSSTNLNGVTGSDSMNGDALNFESKKESASHDMGFFRFESDNEELFGDRPLPEWVGWGEPLDVQDAGSSTNPFVDHDSSGNNLSTKPQIGNLNPSSPNGDSVPSNRSPTLKDSIDGSIDSSQRSIAVPSLFEEDVEFVGVELEGTEKAMEQALKEGIVGEAGPLKRNMVSKVPEKESSDEGGPGIKEFNDANYWRVDQEVAVLE 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00635 747 MobiDBLite consensus disorder prediction 600 664 - -
Vimu4g00635 747 Pfam SIT4 phosphatase-associated protein 28 252 IPR007587 GO:0019903|GO:0043666
Vimu4g00635 747 Pfam SIT4 phosphatase-associated protein 255 387 IPR007587 GO:0019903|GO:0043666
Vimu4g00635 747 SUPERFAMILY ARM repeat 76 289 IPR016024 -
Vimu4g00635 747 MobiDBLite consensus disorder prediction 532 563 - -
Vimu4g00635 747 MobiDBLite consensus disorder prediction 711 733 - -
Vimu4g00635 747 MobiDBLite consensus disorder prediction 533 563 - -
Vimu4g00635 747 MobiDBLite consensus disorder prediction 712 726 - -
Vimu4g00635 747 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 712 IPR007587 GO:0019903|GO:0043666
Vimu4g00635 747 MobiDBLite consensus disorder prediction 607 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00635 Vimu-Chr4 4772190 4780807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00635 K15501 - gmx:100777597 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00635 4 4772190 4780807 Vimu4g00635 4 4772190 4780807 ECH
Vimu4g00635 4 4772190 4780807 Vimu5g01916 5 31065039 31077043 PCT