Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00553 ATGGCGGAATCATCTACCAGTTCTGCTGTTTCAGTTGATTTCATTTCCAGAGACAACAACAGGTTGTGGAAAGGGGCATTTGCTGTGGCTGGAATCATGGTTACCCTCGTTACCTATGGTCTCTTGCAGGAAAAGATCATGAGAGTACCATATGGAGCGGAAAAAGAGTATTTCAAATATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGGTGGTTCTTTGCTGATCTTTCCTGTTACTAAATTTATTCTTCAATGTTTCTTAAAGGCAAGTAAAAAGGCTATGGACCCGGTAGCTCCTGTTTTTACTTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAGACCCTTGCAAAATGTGCAAAAATGATACCAGTTATGGTCTGGGGCACCATCATCATGCAGAAGAGATACCACGGACCTGACTATTTGTTCTCTTTTTTAATTACCCTTGGCTGCTCAGTATTTATCCTGTATCCGCAAATAAAGAATAACTTGCCTTCACAAGATTTACCCTTAGACTACTGTTGTGCCAGCCGTGGCAGCAGAATGTCTGGTGGCATTGAAGACGACATGACAGCTATGGCACTAAGGCCAGGTGACGCAAGCAATGCAGGAACAGACGTAAGTCCTCACAATAGAGGAAGGGAAAATACAGTTTGGGGTGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTATGTTCTTGTATTCTTAGCCTGACAGGTCTTATTTTACAAGGGCATTTAATACCAGCAGTAGAATTTGTTTATCAGCATCACGATTGTTTCTTTGACATAGCATTGCTTTCAACAGTTGCAACAATTAGTCAATTCTTTATCTCGTACACAATTCGCACTTTCGGTGCTCTGACTTTTGCAACCATAATGACCACAAGACAGTTGTTGAGCATTATGCTATCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGATCCCTTTATGGAAAAAGCTTTACGAGGAAACCACCTCAAAAGACAACCTCATCATCAGCAGAACTTGTTCAAAATGGGGATTCAAATAATTTGAAGCACAATCCATGA 1236 0.4078 MAESSTSSAVSVDFISRDNNRLWKGAFAVAGIMVTLVTYGLLQEKIMRVPYGAEKEYFKYSLFLVFCNRITTSAVSGGSLLIFPVTKFILQCFLKASKKAMDPVAPVFTYCLISVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTIIMQKRYHGPDYLFSFLITLGCSVFILYPQIKNNLPSQDLPLDYCCASRGSRMSGGIEDDMTAMALRPGDASNAGTDVSPHNRGRENTVWGVLLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCILSLTGLILQGHLIPAVEFVYQHHDCFFDIALLSTVATISQFFISYTIRTFGALTFATIMTTRQLLSIMLSCVWFAHPLSWEQWIGAVIVFGSLYGKSFTRKPPQKTTSSSAELVQNGDSNNLKHNP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00553 411 MobiDBLite consensus disorder prediction 386 411 - -
Vimu4g00553 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 313 380 - -
Vimu4g00553 411 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 19 385 IPR013657 GO:0055085
Vimu4g00553 411 Pfam UAA transporter family 26 381 IPR013657 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00553 Vimu-Chr4 3991240 3997832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00553 18 400 Organic Solute Cotransporters AT5G59740 67.448 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00553 K15276 - gmx:100782989 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00553 4 3991240 3997832 Vimu4g00553 4 3991240 3997832 ECH
Vimu4g00553 4 3991240 3997832 Vimu5g02050 5 32330076 32334663 PCT