Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00500 ATGGGTGGCCCTGAGAAGAATGAAAGCAAGGGCTTTTTCGCCGCCATGACTTCCGGCTTCTCCATCTTCAGCAATGCTATGCACCGATCTGTTAACGGGTTGCTGGGGTATGAAGGGGTAGAAGTCATAAATCCGGAGGGTGGTAAAGAGGATGCAGAGGAGGAAGCCCAGAGAGGAAGATGGAAACCTGAGGAAAGAGACGGTTACTGGAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACGCTACCTGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGTTGATGGAGTACTCCTACTTGTTAGATCAGGCAGATAAATGTGAGGACCCATACATGAGGATGGTATATGCATCGTCATGGGCTATATCTGTGTACTTTGCATACCAACGGACCTGGAAGCCTTTTAACCCTATCCTTGGAGAGACTTACGAGATGGCTAACCATGGTCGAGTTTCATTTCTTGCAGAACAGGTGAGTCACCATCCCCCGATGAGTGCTGGTCATGCTGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTAAAGACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCCGTTGGAAGAACACGTGTAACCCTCAAGAAGGATGGTGTAGTTATCGATTTGGTTCCCCCTCCAACCAAGGTTAATAATTTGATATTTGGACGAACATGGATTGATTCACCTGGGGAGATGGTAATGACGAACTTGACAACAGGGGACAAAGTTATACTCTATTTTCAACCATGTGGATGGTTTGGGGCTGGTCGCTATGAAGTAGATGGATATGTGTATAACTCTGCCGAGGAGCCTAAAATATTGATGACTGGAAAGTGGAATGAGTCAATGAGTTATCAACCATGTGATTTGGAAGGAGAGCCTCTTCCAGACACAGAATTGAAAGAGGTTTGGCATGTTGCTGATGTACCAGCAAATGATAAATTCGACTATACATACTTTGCGCATAAATTAAACAGCTTTGACACTGCTCCTAGAAAATTGTTGCCATCAGACTCCCGTTTACGTCCAGATAGATTTGCACTTGAAATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAGTTTGGAGGAGAGGCAACGCGCTGAAAAGAAAATCCGAGAAGCCAAAGAGCATAAATTTGCACCAAGATGGTTTGATTTGACTGAAGAGGTGACTTCAACTCCATGGGGTGATTTGGAGATCTACCAATACAATGGTAAATACACTGAGCATCGTACTGCTATTGATAACTCAGACAGCATTGATCATGTTGATAATAAAGATATTGAATTTAATCCATGGCAGTATGGTGATTTGTCCAAAGAATGA 1371 0.4267 MGGPEKNESKGFFAAMTSGFSIFSNAMHRSVNGLLGYEGVEVINPEGGKEDAEEEAQRGRWKPEERDGYWKMMHKYIGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSYLLDQADKCEDPYMRMVYASSWAISVYFAYQRTWKPFNPILGETYEMANHGRVSFLAEQVSHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDVYPVGRTRVTLKKDGVVIDLVPPPTKVNNLIFGRTWIDSPGEMVMTNLTTGDKVILYFQPCGWFGAGRYEVDGYVYNSAEEPKILMTGKWNESMSYQPCDLEGEPLPDTELKEVWHVADVPANDKFDYTYFAHKLNSFDTAPRKLLPSDSRLRPDRFALEMGDLSKSGAEKSSLEERQRAEKKIREAKEHKFAPRWFDLTEEVTSTPWGDLEIYQYNGKYTEHRTAIDNSDSIDHVDNKDIEFNPWQYGDLSKE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00500 456 ProSitePatterns Oxysterol-binding protein family signature. 166 177 IPR018494 -
Vimu4g00500 456 Gene3D - 150 325 - -
Vimu4g00500 456 FunFam oxysterol-binding protein-related protein 3C 150 327 - -
Vimu4g00500 456 Pfam Oxysterol-binding protein 69 426 IPR000648 GO:0008289
Vimu4g00500 456 FunFam Oxysterol-binding protein-related protein 3C 358 451 - -
Vimu4g00500 456 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 57 426 IPR000648 GO:0008289
Vimu4g00500 456 Gene3D - 359 449 - -
Vimu4g00500 456 SUPERFAMILY Oxysterol-binding protein-like 62 438 IPR037239 -
Vimu4g00500 456 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00500 Vimu-Chr4 3630305 3636310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00500 - - gmx:100779808 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00500 4 3630305 3636310 Vimu4g00500 4 3630305 3636310 ECH
Vimu4g00500 4 3630305 3636310 Vimu5g02099 5 32670797 32675984 PCT