Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00498 ATGAAATGTGAGGAGCCAGCGTCTTTCACGATGGTTCAGACCAGAAGCGACCACATGATCGAAAGGGTGCCACGTGTCGGAATCTGGTTGTGCATTGGCCCATCCAATTGCGTGGAACCGGTCTTTAGGTGCCTTATCATCGACCTACTATATCCTGTGCCCTTCCTTGCAATCACCGAGAGCTCCGGTCACACTGACGTACGGCTTTATATTGAGATCGGTGGGATCAAGCAACGTGTAGAGTTCAAGTTTATTTACAGGTATTGGACGGCTGATGTTTCGTGTTTGGTCAATCCTTATATTGGCATGAAGAGGTCATATTATAGCTTTAATGGACATCGGGTGCCAACCAAGCGCCGAGCTACTAGATCAGCTAGGAGAAACGCTACATTTCAAAGAAGGTTGGAAGAGAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACAATTTATTGCAAGGGAAACAGAATCCTACCACATGTAGTGATAGTTCATTGGAAAAAGATAGGGATGGATTTGTAAAAGAGGAGTGCCAAGATGCAAATAAACCATTAAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATTTCAGCATGACTTTGTTAAAGAAGGATGCCCAGATGCAAATAAACCATTAAAAGCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAACGTTTCTCTAATATTTCTTCCCAAGTGTACAATCAAAATTGTTGTTTGAAGGAGTTCGCAGTTCATGAAACTGAAGGCCATTCATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAAGTTTGTTGCTGAAACACTGGTGGATGGGAAAGGCCAAAATGGAACTGAAAATTTAGCTAGCAAAGTTGAATTGGGTTCTTCTGGAAGTCCAGAGAGTATTGGTTTCAAGTTAGATGGTGATGTAAGTAAAGTTAAAGATGTTAAATTTGGGAAGGCTCCCATGGATACTGGGACTGGGTTGTGCTGTTCTGAGGATCACTTGGATGAAAAACCTCCAGCACTGGTAAGTTCTTGTTGCAATGCCAAGTTGTCTGGGTATGACGACAGCATGCCTCATAGCTCATTGTCCAAAGGTTGTGACAATGTACTAGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTAGTACCAAAATAAAGTCCTGTAGACCAATTACTTGTATAGATGATAGAAAAATAAACAAAAGATTGGCTTCAAAATATCTTAAAGTTGCTCAAGAATCCAAGCCTGATAAGTTATCTAATAGTGTTTTGGATGGAAATTTGAAGCCAGTTTACAGCAATAGGAAGAACTACTACAAAAGCCAAAGATCTGAAATGAACATTCCTTTCAAAAAGAGGAAACTTTTTAAATGTAGCTCTGATACAAATTCTAACGGATATATCAGAAGTGGTGACACTTATTTTTCACTCAAGAATGAAACGAATCAAAGTGTTTCATATTCATCTTCCCGGATGAGCAAAGATCATGGAACATCATCCTTGGGGCACTCTGCATTACGGTCTAGAGATTCTCATGGTATGGGAAGATTAAGAGAGATCAAATCATTTAGAGTGCCCGAGCTTTTTATTGAGATTCCAGAAACTGCAACCATTGGGTCCTTAAAGAGGACAGTGATGGAGGCAGTGACTGCAGTACTCGGAGGTGGATTGCGCGTTGGAGTGATTCTCCATGGGAAGAAAGTTAGAGATGACAGTAAAACTCTTCTCCAGACTGGAATTTCTCATGATAACCACCTGGATGCTTTGGGATTCGCCTTGGAGCCTAATTTTTCACAAAATCTACCACCTGCATGTGCAACTAATTCTCTTCGCGTTCCTACTGCGGATGTGCCTCAACCTTTTATAGGGTATCCTTCAGTTCCTGCTGTAATTCATCAAAGGATTCAGGGTTTTTCTAACATGTTAGCTGAGCATCAAGCAACAGGTTTAGGTAACCTCGTGGAAAGTGATCATGATTCAGCTCCTTCTCCCATCAACACATCAGATGAAAAAAAATTGTCAGATTCTAAAGAACTTATTCCTGAAATGGGTATGGAGGCACTAGCTGTGCTACCTGGGCATCAAAAGTCAAAGCGAACCGAAATCGCACAGCGCCGTATTCGTAGGCCTTTTTCTGTTGCTGAAGTGGAAGCATTGGTTCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGATAATGCAAAGCATCGAACATACGTGGATTTGAAGGATAAATGGAAAACGCTGGTGCACACTGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAGCCTGTTCCTCAGGAACTTTTGGATAGGCCATTGTCTAGAATAGAATCCTCTTTCATTGCCTCTGCCATTCCTCTGATAACCTCCAATCGCACCTCACCGGCGTTGGCCACGAGAAACAGTGGAAGGAGCAGCGCGACGAATCGGAAATCTACCGCACAGATTTACGTCTCACAACACCTCCATTACAGATTTTGCGTTTGTGATAGATTAATGGGTGACAAGAAGAAAAAGGCTCAGATGTTTGTGAAACTAGTGTCTGCTGCCGGCACTGGATTTTTCTATGTAAAGAGGAAGCCAAGGCAGTTCACAGAGAAGCTTGAGTTTCGAAAATTTGATCCTAGGGTTAATCGTCATGTTCTCTTTACAGAGGCTAAGATGAAGTGA 2727 0.4217 MKCEEPASFTMVQTRSDHMIERVPRVGIWLCIGPSNCVEPVFRCLIIDLLYPVPFLAITESSGHTDVRLYIEIGGIKQRVEFKFIYRYWTADVSCLVNPYIGMKRSYYSFNGHRVPTKRRATRSARRNATFQRRLEENQMCAFDLLATVADNLLQGKQNPTTCSDSSLEKDRDGFVKEECQDANKPLKTELSDEASCDRRFQHDFVKEGCPDANKPLKAELSDEGSSDRKRFSNISSQVYNQNCCLKEFAVHETEGHSCIASIVTSSSCSEKFVAETLVDGKGQNGTENLASKVELGSSGSPESIGFKLDGDVSKVKDVKFGKAPMDTGTGLCCSEDHLDEKPPALVSSCCNAKLSGYDDSMPHSSLSKGCDNVLVDSRDDDENFSGCAHPSTKIKSCRPITCIDDRKINKRLASKYLKVAQESKPDKLSNSVLDGNLKPVYSNRKNYYKSQRSEMNIPFKKRKLFKCSSDTNSNGYIRSGDTYFSLKNETNQSVSYSSSRMSKDHGTSSLGHSALRSRDSHGMGRLREIKSFRVPELFIEIPETATIGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDSKTLLQTGISHDNHLDALGFALEPNFSQNLPPACATNSLRVPTADVPQPFIGYPSVPAVIHQRIQGFSNMLAEHQATGLGNLVESDHDSAPSPINTSDEKKLSDSKELIPEMGMEALAVLPGHQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRPLSRIESSFIASAIPLITSNRTSPALATRNSGRSSATNRKSTAQIYVSQHLHYRFCVCDRLMGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNRHVLFTEAKMK 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00498 908 Gene3D - 706 801 - -
Vimu4g00498 908 PANTHER TELOMERIC REPEAT BINDING PROTEIN 104 792 IPR031105 -
Vimu4g00498 908 Gene3D Ribosomal protein L33 854 908 IPR038584 -
Vimu4g00498 908 SUPERFAMILY Homeodomain-like 715 788 IPR009057 -
Vimu4g00498 908 FunFam 50S ribosomal protein L33 852 908 - -
Vimu4g00498 908 NCBIfam 50S ribosomal protein L33 855 908 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu4g00498 908 MobiDBLite consensus disorder prediction 496 520 - -
Vimu4g00498 908 SMART sant 717 770 IPR001005 -
Vimu4g00498 908 MobiDBLite consensus disorder prediction 496 516 - -
Vimu4g00498 908 CDD SANT_TRF 719 769 - -
Vimu4g00498 908 Pfam Ribosomal protein L33 863 906 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu4g00498 908 SUPERFAMILY Zn-binding ribosomal proteins 855 906 IPR011332 GO:0006412
Vimu4g00498 908 ProSiteProfiles Myb-like domain profile. 713 768 IPR001005 -
Vimu4g00498 908 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 713 772 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00498 Vimu-Chr4 3620794 3628813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00498 - - gmx:100780881 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00498 4 3620794 3628813 Vimu4g00498 4 3620794 3628813 ECH
Vimu4g00498 4 3620794 3628813 Vimu6g01833 6 16575367 16578251 ECH
Vimu4g00498 4 3620794 3628813 Vimu5g02100 5 32679619 32685070 PCT