Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00493 ATGGACAACGTGTTGAGCCTGCCAGAGTCTGAAATGGAGAACGGGGATCAGTTCCAGGGGATTTCCAATGCGAAATACGATTGTCTTTTATTTGATCTTGATGATACCCTTTATCCTTTGAGTTCTGGATTGGCTGAGCAAGTGAAGAAAAATATCCAGGAGTACATGCTTCAAAAGCTTGGGATACCAGAGGCTAGAGTTCCTGAACTGTGCTTTTCCTTATACAAGACTTATGGTACAACCATGGCTGGTCTCAAGGCTATTGGCTATGACTTTGACTATGATGACTTTCATAGCTTTGTTCATGGGAGATTGCCATATGATATACTGAAACCTGACCCTGTTCTCAGGGGAGTTTTGTTGAGCCTGCCTGTTAGAAAAATTATTTTTACGAACTCAGACAAGGCCCATGCTAGTAGGGTGCTTCGCAGGCTTGGGTTGGAGGATTGTTTTGAAACAGTTATATGCTTTGAGACCCTGAATTCCTCCAATGACGATGGCAGTGAATGTACACCAAGTTCCACAGGGGTTTTTGATTTTTATGAATACATTCACAGTCCTGATTCTGATGTAGTGCTTCCACGGACCCCGGTTGTATGTAAACCCTCTCAAGATGCATTTGAAAAGGTTTTCAGTATAGCAGATATAGACCCTCGAAGGACATTATTCTTTGATGACAGTCTCCGCAATTTACAAACGGGCAAATCCTCAGGCCTTCACACAGTCTTGGTGGGAAATTCTGTTAGAACTATGGGAGTGGATCATGCCTTAGAGAGCATCCATAATATGAAAGAAGCATTTCCAGAACTGTGGGAAAGCAATGAGAAGCCTGAAAGTGTGGAGTGTTCTAGAAAAGTTTCGATTGAGACATCAGTAATAGCTTAA 885 0.4237 MDNVLSLPESEMENGDQFQGISNAKYDCLLFDLDDTLYPLSSGLAEQVKKNIQEYMLQKLGIPEARVPELCFSLYKTYGTTMAGLKAIGYDFDYDDFHSFVHGRLPYDILKPDPVLRGVLLSLPVRKIIFTNSDKAHASRVLRRLGLEDCFETVICFETLNSSNDDGSECTPSSTGVFDFYEYIHSPDSDVVLPRTPVVCKPSQDAFEKVFSIADIDPRRTLFFDDSLRNLQTGKSSGLHTVLVGNSVRTMGVDHALESIHNMKEAFPELWESNEKPESVECSRKVSIETSVIA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00493 294 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 20 292 - -
Vimu4g00493 294 SFLD C1.5.3: 5'-Nucleotidase Like 23 274 IPR010237 -
Vimu4g00493 294 CDD HAD_5NT 28 246 IPR010237 -
Vimu4g00493 294 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 23 274 - -
Vimu4g00493 294 Gene3D - 17 110 - -
Vimu4g00493 294 NCBIfam HAD-IA family hydrolase 194 244 IPR006439 -
Vimu4g00493 294 SUPERFAMILY HAD-like 26 265 IPR036412 -
Vimu4g00493 294 Gene3D - 118 278 IPR023214 -
Vimu4g00493 294 NCBIfam pyrimidine 5'-nucleotidase 27 244 IPR010237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00493 Vimu-Chr4 3571412 3573420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00493 K07025 - gmx:100790444 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00493 4 3571412 3573420 Vimu5g02106 5 32710729 32712654 PCT