Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00444 ATGGATAGAACATCGCAGAGCAGCTCCGATTCCCCGACGCGAGATCCGAAAGTGCTTTCCATCGAATGTCTGAGAGGAAGCTCCAAAGCCGATGAGTGGACCGGCGACATGCTCCAAAGCGGCGACATCGTGGAGGAGCTCCGAATCGGTTCGACGGCGAAATCGCAGATCCGGTACCAGTCACCGTTCAAGGGCGGGAGGAGCGGCGTGCAGAAGATCCTTCAGGAGGCGTTCAAGAAGAAGGAGACGTCGATTGTGGTTCGGGTGCGACGAGGGCCGGAGGAGTTGGCGGAGTTGCAGGCGTGCATCGTGCCTAACGAACTCGCGGCGAAGAAGGGTTTGGTTCTTCGCTCGATTGATGACCCGAATTACGTGGTCGGGTTCTTGGATCGGACCGAAGCAGAATGCTTTGAGCTTCAAGCTTCAAGGGGCACTAGGATGGTAAATGCATTGACCAGGACCAAGTTACAGGATGGATATGTTTCGTATTCATGGGAGAGGAGGATGCAAGAAATGCTACCAATTCCCAATTCTAGCAACTTTCTTTCTATATTATTCCTTCCCAAAGCTTCAGATCGGATAGCTTCTCGCTACAATGATTTGGAGGATACCTTGGCCAGGGCAAATGCATGGCTCAATGCAGGTCAAGCTTCAGGGGTCCCTATTGTTTTCATGAACATCCAAACTGAGTCCCTACTTACTAAGATATCAGGAGAGACCGCTTCTTCCACTGTGAATGCGGGGTCTTTATCTGACTTAGCTAACTTGGCAAATGAAAGCCTTTACGGGTTTGAGGATTACCATGGAGTAGACATTGGCGTTGTACGAGCAGTTCGCCTGTGGTATGCTCCGGTTGCTGGAGAGTTTTCTATTGAAATCAAACTGAAAGAGGAAGACTCAAAGCTTGGCTTTGCCATTAGTCGTACTGAAGAGGGATTTATTTTCATCTCATCAGTCATTAATCAAGAAAATGTACCAGCCACACGATCAGGCCTGAGCAATCTGTATAAGCTGGCAACAGATACTTGTAGGATATTGGTGGTTTCAAGAGTGTCAAATCAAAAAGTCCTTCCATGGATGGTTTCTTCAACAGGAGCTATTCGGTGTTATGACACTGTTTCACTCAGCCAGAAGCTGTCCTTGCACCGACACACCAGAGTTCCCATTCTCCTGCACGTCTTCCTTTGGGACAGGGCCTTGGCTTCAAGTGTAGGAAGCACGAGATTTAGGGCTCTGTCTTCTGTGTTGCCATCACATATATCTGAAGTTTCGTTACCACCCATTCCCAACGAAACTCATGTGCTGCCATTGCCCCCTCCTCCACCTTCTGAACCAACTCATACATCAGATATTTCACACTCAAAGCTTCAGAGAGACACGGCTGGGGAATTCTCTTTTAGATTCCATGATTTTGCTTTGTCTAGTAACTGGTTGACTGCATATGGACAAGTTAGATCCACTGGCGGAAAGGCGCCGAGGAAGCAATTGGCAACTAAAGCTGCTCGGAAGTCCGCTCCGGCCACCGGTGGAGTGAAGAAGCCCCACTGCTTCAGGCCAGGAACGGTCACTCTGAGGGAGATCAGAGAGTACCAGAAGAGCACTGACCTACTGATACGAAAATTTCAATTCCAGCGACTGGTGAGAGAAATCGCTCAGGAACGGTGGCTATGA 1671 0.4925 MDRTSQSSSDSPTRDPKVLSIECLRGSSKADEWTGDMLQSGDIVEELRIGSTAKSQIRYQSPFKGGRSGVQKILQEAFKKKETSIVVRVRRGPEELAELQACIVPNELAAKKGLVLRSIDDPNYVVGFLDRTEAECFELQASRGTRMVNALTRTKLQDGYVSYSWERRMQEMLPIPNSSNFLSILFLPKASDRIASRYNDLEDTLARANAWLNAGQASGVPIVFMNIQTESLLTKISGETASSTVNAGSLSDLANLANESLYGFEDYHGVDIGVVRAVRLWYAPVAGEFSIEIKLKEEDSKLGFAISRTEEGFIFISSVINQENVPATRSGLSNLYKLATDTCRILVVSRVSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRALASSVGSTRFRALSSVLPSHISEVSLPPIPNETHVLPLPPPPPSEPTHTSDISHSKLQRDTAGEFSFRFHDFALSSNWLTAYGQVRSTGGKAPRKQLATKAARKSAPATGGVKKPHCFRPGTVTLREIREYQKSTDLLIRKFQFQRLVREIAQERWL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00444 556 PANTHER OS02G0717600 PROTEIN 5 466 - -
Vimu4g00444 556 MobiDBLite consensus disorder prediction 431 446 - -
Vimu4g00444 556 SUPERFAMILY Histone-fold 484 552 IPR009072 GO:0046982
Vimu4g00444 556 PRINTS Histone H3 signature 533 550 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu4g00444 556 PRINTS Histone H3 signature 492 506 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu4g00444 556 PRINTS Histone H3 signature 478 492 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu4g00444 556 PRINTS Histone H3 signature 509 530 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu4g00444 556 Pfam Core histone H2A/H2B/H3/H4 486 552 IPR007125 GO:0003677
Vimu4g00444 556 MobiDBLite consensus disorder prediction 431 454 - -
Vimu4g00444 556 ProSitePatterns Histone H3 signature 1. 490 496 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu4g00444 556 Gene3D Histone, subunit A 481 554 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00444 Vimu-Chr4 3228012 3233736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00444 - - var:108333257 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00444 4 3228012 3233736 Vimu4g00444 4 3228012 3233736 ECH
Vimu4g00444 4 3228012 3233736 Vimu5g02198 5 33277737 33280271 PCT