Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00376 ATGTCTGCATTATCTTCGGATCAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGTTTGTCAAAGTTGCTTGACGGCATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTAAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCCTATGGAGGAGCAAGGACTGGAATTTCTTCAATTTTCTTTCCTCTGGTTCATCTGTCTTCTAATTCGTGAGGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGGATGCCATGTTACATAAACTGTCATTTAGCAAAGACACTGCTGTGGGAATCCTAGACTCCCGATTTAATCAGACCCTCAGAAATGTTCAAGGGTATCTATCCTCCTTTGATCACGAATTTTCGATGGGTGAAATTCTAATACACCGTACTCAGGAGTGGTTTATGTCCGTCTGGTGTAACCACCCCATTTTGATGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTAGTTCTCCAGATTACTCAAGCTTACCTTCACCAACTTATACAAGGAGCCCCTCATACAGTGATACTAGAACAAGTGGCCACACATCTGAGAGAATAGAGAAGGAAGCTCAGAGTACAAGGAAATCATTGGGTACTCCAAATGAGAATAAGTTGAAAGTATCAGCATCCAATGTAGAGAGCCCGTCTGAAGAAGTACAGAAATCTTCATTGGGTGCTAGAGCTACAGATTCTGCTAGGGTATTGAAATTCACAAAGAGCTTATATTTCTTCCTCATCTATCCTGTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTACATGCGTCCTGCAGTGTGGAGACTTCTCTTTGGATATGCACCAACTAATTCAGATAGAAGGGAAGGAGTTTTGAGAAGAAAGCGTCTTGAGTATCTTGACTATGTTTCTCAGTATTATGATATTCCTGATGCAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCGAGAACTGTACCTGAAGTGTCATTCTTTCAGCAAGAGCAAGTTCAAAAATCATTGGAGCGTATTCTTTACACATGGGCTATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGACCTTGTTACGCCATTTTTAGTTGTTTTCCTCTCAGAATACCTAGAAGGCGCCATAGATAATTGGTCAATGTCTGCATTATCTTTGGATCAGATCTCTAATGTAGAGGCCGACTGCTATTGGTGTTTGTCAAAGTTGCTTGACGGCATGCAAGACCATTATACATTTGCCCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTAAAGGAATTGGTCAGGAGGATTGACGTTCCACTAGATCCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATTCGTGAGGAAGAAGTGCATGCGTGTTTTATAAATTTGCTGCATATCAGGCCTCAAGAACTTGTACATTCAGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGCCAAGATGCCGAGGGGTAGTATTTCTTGATCCATTTCCCTCTTCTGGTACATTGAATGATCCAAACAGAAATACACATCTTCTGCAGAGATGTTCTAGTCTGTTACGGCTTGGTATGCTTCTTTTGGGTGGGCTAATGGTTAGCCAAGTGGCTAGGAACGTGGCATTTATACTGCTCCAGAAATACACACAGCAAGCTGTATCTTTAGGCCAAATACAGTCAACCTTGAATTCTAGGTGGCCGGGGACTTCTTCATTCCTAATTAAAGCACATTGGGGAAGAAAGGGTTATGAGCAGATTGGTGCTGACTTTGGACGGTGGCTGAACGGACTTAATGAGCAGTGTACTTGGCTGGTTTATGCTAGAAAAATCTTCGTATGGGTGCGGTGTTTTGAATTGAGAAGTGTGTACTTGCCAGAACCAAACCAAACCGAACTCCTCCGCCGTCTCTCTCTCTCTCTCCGTCGTCTCGTCCGGCCACGGCGCCCTCCCACCGAAGCAGCCCCTCAATCGCCGCAATCAATCCCTAACCGAGACAAACTTCCCTCTTTAGCTCCTCTTTCAACCTCTGCCGGAATCCGTCAGTTTGGTTCTGATCAACCTCTCGCAGGAGAAACTGCTGTTTCCCAAGTAGGACCACAAAGAAAGATTTATCTCCGCCTGGGAACTTTTACGCCGCACGAATCTCGAGTTCTAACTTCAACTGCCAATCATTGTACTTTAGGGCAAGTTTCCATATGGCCTAGTATAACATCGTGGGACTGCAGGTTTGGAATACTGGAAATTTCGGTAAATGTTGTATTTCCGAAAGAAAAAGAACTTCAAGTAAGTTCGCAATGTAGGGAGTGGATGCCAAATAATTCTTATTCTTCAGGAGTTCGGATCGGAGTTATGGACACAAATTTTAGTACTTTGGTTGTGATTGGAACGGGGAAGAGGGGGCCAGGGAAGAATGAAAGGATGAATCTACAACAGCCTGGGCAGCCCAAGTCCTCCAATGGATACAGCCGCCGAAAATCTGAAAGAGAAGGGACAATTAAATCTGAGAATAAAATCCTGTCTGGCAAATTAAATGCCAGCAGATTAACAAATACAGGTGCAGTGACTGGCAGTAAAGGTGGCAATTACGAGAATCCTTCACATGATCGTTTAGTGTATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCACTTGAAAAATGGATCCACGTACTCTGGAGTCTTTCATGCGACAAACACAGAAAAAGATTTTGGAATCGTTTTGAAAATGGCTCGCTTAACAAAAGATGGTTTGTCACGAGGACAGAAATCTGGTGCAGAATTCGTCAGCAAGCCCCCTATGAAGATTTTAATTATACCTGCCAAAGACGTTGTCCAAGTTATAGCACAGGATGTTGCTATTGCCAGGGATGGTTTACCTAATGAATCTCACCAGGATATGCACCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCATGTTGAGCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCAGAACTGGAAAACATATTTGATGGCCATTGGAATAGCACATTCAATGAGGAACTTTATACGACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTGGAAAAGCAAGCTCTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCGGAGGAAAGAGGCTTTCACTTGCATGAAGACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTTTATAGGGGCAAACGTGCTGATGACAGTGGATTTGATGAGGATGTACTGTTTGATACCCACAGTTCTGATACTTTTGGTGGTGTATTTGGTTCGGTTGTTAAGAGGTCCAGTGAAATAAGTGGTGGAAAAGGAAATGACGGAGCTCGAACATTGGCAAATTCCTCTGTGGATCACAAGCAATCATCTCAGTCAAGTACTAGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCTAAGCAGTTAGCATCTGAACTCCCTGCCATAAGCTATTCATCGGTGGATGGGGAAAGCAGGATTCTGGAGAACTCAATTAGTAATCAAGATGGAGACAATGATACTAAGGAAGCAAGTGTGATTCAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGATTCACAGGGACCACTCTACTTGAAGAAGGATGGCACTGATAAAGGGGTATTATCTCCGAATGCTAGCTCCTATGCCCCTTCAATTCATACTTCATTAAAAGCTCATGAAAAGATGGGATCACATGGAGATTTAATTGGGGGTTCAGCAACTGGCAAGGTTAATGGGGAAACAAAATCTGTAAATTCACGTGGGACCCCATATGTGTCAGATTCAGTTGGAATCCCTGCAGCATCTTCTGGTCCTGGCTTATCTCCAAGTTCATCAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCACCTGCTCGGCCTCCCACTCCACCGTCCGATGGTTCCTTCTATTTTCCAACTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAGATAGTTTGCCAAAGAAGTTATGCAGAATTGTTGGGTTTGGCCTCCCAGCCTTCATTGGACCTACTTTTGCTGGTCCACAACCTATGGTGTATAATCCTCAGGTAGCACCAATGCCGTCTCAAGCATATTTTCATCCGAATGCACCACAGTATGGACAGCTCCTTGGTCATCCTAGGCTATACATGCCGGGTTACCTGCCCGAACTTTATCTGCTTATTAATGTTCTGAGAACTCGATCTTCTGAAATCAATATTTACAGGAAATGCCATACAAGGGACGGGACTATTGACGACTTGGCTATTAGCATTCTTGTTGGCAAGATATCTGCAGCTGATGCGAAATCTCTAAAGGCATGTGTTATGTTATTTGCCAAGTTTGCTAATTCTGGGAGATAA 4737 0.4302 MSALSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSPMEEQGLEFLQFSFLWFICLLIREVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTDAMLHKLSFSKDTAVGILDSRFNQTLRNVQGYLSSFDHEFSMGEILIHRTQEWFMSVWCNHPILMLLKGRNIPGKILLSQRVSSPDYSSLPSPTYTRSPSYSDTRTSGHTSERIEKEAQSTRKSLGTPNENKLKVSASNVESPSEEVQKSSLGARATDSARVLKFTKSLYFFLIYPVEKLRELSWSGVPDYMRPAVWRLLFGYAPTNSDRREGVLRRKRLEYLDYVSQYYDIPDAERSDDEINMLRQIAVDCPRTVPEVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGAIDNWSMSALSLDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDVPLDPVSSHMEEQGLEFLQFAFRWFNCLLIREEEVHACFINLLHIRPQELVHSVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTPRCRGVVFLDPFPSSGTLNDPNRNTHLLQRCSSLLRLGMLLLGGLMVSQVARNVAFILLQKYTQQAVSLGQIQSTLNSRWPGTSSFLIKAHWGRKGYEQIGADFGRWLNGLNEQCTWLVYARKIFVWVRCFELRSVYLPEPNQTELLRRLSLSLRRLVRPRRPPTEAAPQSPQSIPNRDKLPSLAPLSTSAGIRQFGSDQPLAGETAVSQVGPQRKIYLRLGTFTPHESRVLTSTANHCTLGQVSIWPSITSWDCRFGILEISVNVVFPKEKELQVSSQCREWMPNNSYSSGVRIGVMDTNFSTLVVIGTGKRGPGKNERMNLQQPGQPKSSNGYSRRKSEREGTIKSENKILSGKLNASRLTNTGAVTGSKGGNYENPSHDRLVYVTTCLIGHQVEVHLKNGSTYSGVFHATNTEKDFGIVLKMARLTKDGLSRGQKSGAEFVSKPPMKILIIPAKDVVQVIAQDVAIARDGLPNESHQDMHQEIMVDSLISQSRHVELGRELKPWVPDEDDPQCPELENIFDGHWNSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGFHLHEDFDIDEETRFSSVYRGKRADDSGFDEDVLFDTHSSDTFGGVFGSVVKRSSEISGGKGNDGARTLANSSVDHKQSSQSSTSVDLSRSGSYDHAKQLASELPAISYSSVDGESRILENSISNQDGDNDTKEASVIQAEDVQLSKSEDSQGPLYLKKDGTDKGVLSPNASSYAPSIHTSLKAHEKMGSHGDLIGGSATGKVNGETKSVNSRGTPYVSDSVGIPAASSGPGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPPSDGSFYFPTNVTTVPSMPGMPMGIGDSLPKKLCRIVGFGLPAFIGPTFAGPQPMVYNPQVAPMPSQAYFHPNAPQYGQLLGHPRLYMPGYLPELYLLINVLRTRSSEINIYRKCHTRDGTIDDLAISILVGKISAADAKSLKACVMLFAKFANSGR 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00376 1578 ProSiteProfiles TBC/rab GAP domain profile. 303 554 IPR000195 -
Vimu4g00376 1578 Pfam Rab-GTPase-TBC domain 307 516 IPR000195 -
Vimu4g00376 1578 Pfam Rab-GTPase-TBC domain 11 114 IPR000195 -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1211 1237 - -
Vimu4g00376 1578 ProSiteProfiles Sm domain profile. 954 1039 IPR047575 GO:0003723
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 199 265 - -
Vimu4g00376 1578 Pfam LsmAD domain 1099 1166 IPR009604 -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 732 752 - -
Vimu4g00376 1578 PANTHER ATAXIN 2-RELATED 925 1510 IPR045117 GO:0003723
Vimu4g00376 1578 FunFam TBC domain containing protein 333 464 - -
Vimu4g00376 1578 Pfam Ataxin 2 SM domain 952 1035 IPR025852 -
Vimu4g00376 1578 Gene3D - 959 1033 - -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1376 1403 - -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1334 1429 - -
Vimu4g00376 1578 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 35 115 IPR035969 -
Vimu4g00376 1578 ProSiteProfiles TBC/rab GAP domain profile. 1 99 IPR000195 -
Vimu4g00376 1578 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 466 573 IPR035969 -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1200 1237 - -
Vimu4g00376 1578 Gene3D - 465 607 - -
Vimu4g00376 1578 Gene3D - 34 165 - -
Vimu4g00376 1578 SMART LsmAD_2 1099 1167 IPR009604 -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1348 1364 - -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 199 223 - -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 1286 1318 - -
Vimu4g00376 1578 SMART tbc_4 300 577 IPR000195 -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 237 265 - -
Vimu4g00376 1578 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 340 464 - -
Vimu4g00376 1578 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 289 487 IPR035969 -
Vimu4g00376 1578 Coils Coil 1117 1137 - -
Vimu4g00376 1578 MobiDBLite consensus disorder prediction 880 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00376 Vimu-Chr4 2658882 2691373 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00376 - - gmx:100812754 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00376 4 2658882 2691373 Vimu4g00376 4 2658882 2691373 ECH
Vimu4g00376 4 2658882 2691373 Vimu11g03031 11 49927284 49928976 PCT