Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00365 ATGTTTCAAGTTCCAAAAGTTTCAGGAATCCTTAATCCAGGAATCCTCAACCCAGGAGGCCATAGTCAGAACAGGATAAAAGGGACAGTGGTGTTGATGCGTAAGAATGTTTTGGATTTCAACAGTGTCGCTGATTTCACCAAAGGAAACGTTGGTGGAGTCATTGGAACTGGTCTCGACGTTATTGGTTCAACAGTTGATGGCCTCACTGCCTTCTTAGGCCGAAGTGTTTCTCTTCAGCTCATCAGTGCCACTAAATCTGATGAAAGTGGAAAAGGAAAAGTTGGTAAGGATACCTTCATTGAAGGGATCATTACGTCGTTACCAACTTTGGGAGCAGGGGAGTCTGCATTCTATGTTCATTTTGAATGGGACCAAAGCATGGGAATCCCTGGTGCATTTTACGTTAAGAATTTCATGCAAGTTGAGTTTTTCCTCAAGAGTTTGACTCTTGAAGACGTTCCAAACCATGGAACCATTCGCTTTGTTTGCAACTCATGGATTTACAACACTAACCTTTACAAGAAAAGCTTGCGCATATTCTTCGCCAACCATACTTATGTTCCAAGTGAGACACCAAAACCGCTTGTGCATTATAGAGAAGAAGAATTGATTAATTTAAGAGGAGATGGAACAGGAGAACGCAAGGAACATGAGAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATCTCAATGAAAATTTTGTTCGTCCTATTCTTGGAGGCTCTTCCACTCATCCCTATCCTCGTAGGGGAAGAACTGGTCGATACCCAACAAGGAAAGATTCGAATTGTGAGAAGCCAGGGGAAGTTTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAATCTTCGGATTTCCTTGCGTATGGGATAAAATCTTTATCTCAGTTTGTCTTACCAGCTTTTGAATCTGTGTTCAGTTTAAACTTGACCCCGAATGAGTTTGATAGCTTCCAAGATGTTCGTGACCTCTGTGAAGGTGGAATCAAGCTTCCCACACAAGTAATTAGCTCAATTGCCCCTTTACCAGTGATCAAAGAACTCTTTCGTACCGATGGCGAACAAGTTCTCAAGTTTCCAACACCTCACGTCATTCAAGTGAATAAGTCAGCGTGGATGACCGATGAAGAATTTGCAAGAGAGATGATTGCGGGAGTAAATCCCAACGTAATTCGTGGTCTTAAAGAGTTTCCTCCAAAAAGCAATCTGGATCCTGCAACATATGGTGATCAAAACAGTAAGATAACAGCAGAGGCGCTTGATCTAGAGGGAAGCACAGTGGACGAGGCTCTTGCAAATAACAGGTTATTTGTGTTAGATTACCATGATATCTTCATGCCATTTATTCGGGGGATAAATCAGACTTATGCCAAAGCTTATGCCACAAGAACTATCCTTTTTTTGAAAGAAAATGGAACTCTGAAGCCAGTGGCCATCGAATTGAGTTTGCCACATCCTGCCGGGGACCAGTCAGGTGCTGTCAGCCAAGTAATTTTACCTGCAAAAGAAGGTGTTGAAAGTACAATTTGGCTGCTAGCCAAAGCTTATGTAGTTGTAAATGATTCTTGCTATCATCAACTCATGAGCCATTGGTTAAATACTCATGCAGTGATGGAGCCATTCATCATAGCAACACACCGGCACCTTAGTGCGCTTCATCCAATTTATAAGCTTCTAACTCCTCATTATCGTGACACCATGAACATCAATGCACTTGCCAGACAGTCTCTAATTAATGCTGATGGCATCATAGAGAAATCCTTTTTGCCCTCAAAGTATTCTGTGGAGATGTCTTCAGCGGTTTATAAGAATTGGGTTTTCACTGATCAAGCACTGCCTGCAGAACTTATCAAGAGAGGAGTGGCAGTTAAGGATTCATCAGCCCCACATGGACTTCGTCTCTTGATTGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGGCTGTGATTAAGTCATGGGTTCAAGAGTATGTGTCATTGTACTATGCAAAAGATGATGATGTCAAATCTGATCCTGAACTCCAACATTGGTGGAAAGAGGCTGTGGAGAAAGGACATGCTGATTTGAAAGACAAACCATGGTGGCCTAAGTTGCAGACACTTGAGGAGCTCGTTGAAATCTGCACCATTATCATATGGACTGGTTCAGCTCTCCATGCAGCTGTTAATTTTGGTCAATACCCTTATGGAGGTTTTATTCTGAACCGTCCAACTTCTAGTAGAAGGTTGCTTCCTGAGAAAGGCACACCAGAATATGAAGAAATGGTGAACAGCCATCAAAAGGCCTATTTGAGAACAATTACGTCAAAGTTTCAGACTATGATTGACCTTTCTGTGATAGAGATATTGTCAAGGCATGCCTCTGATGAGGTCTACCTTGGTCAAAGGGAAAACCCACATTGGACCTCTGATTCCAAAGCGTTGCAAGCCTTTCAAAAGTTTGGAAACAAACTGAAGGATATTGAGGAAAAACTCGCTAGCAAGAACAAAGATGAGAAACTGAGAAACCGATTTGGACCAGTTGAATTGCCATACACTTTGCTTCATCCTACCAGTGAGGAAGGGTTGACCTTCAGGGGAATTCCTAATAGCATTTCCATCTGA 2625 0.4202 MFQVPKVSGILNPGILNPGGHSQNRIKGTVVLMRKNVLDFNSVADFTKGNVGGVIGTGLDVIGSTVDGLTAFLGRSVSLQLISATKSDESGKGKVGKDTFIEGIITSLPTLGAGESAFYVHFEWDQSMGIPGAFYVKNFMQVEFFLKSLTLEDVPNHGTIRFVCNSWIYNTNLYKKSLRIFFANHTYVPSETPKPLVHYREEELINLRGDGTGERKEHERIYDYDVYNDLGNPDLNENFVRPILGGSSTHPYPRRGRTGRYPTRKDSNCEKPGEVYVPRDENFGHLKSSDFLAYGIKSLSQFVLPAFESVFSLNLTPNEFDSFQDVRDLCEGGIKLPTQVISSIAPLPVIKELFRTDGEQVLKFPTPHVIQVNKSAWMTDEEFAREMIAGVNPNVIRGLKEFPPKSNLDPATYGDQNSKITAEALDLEGSTVDEALANNRLFVLDYHDIFMPFIRGINQTYAKAYATRTILFLKENGTLKPVAIELSLPHPAGDQSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFIIATHRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKYSVEMSSAVYKNWVFTDQALPAELIKRGVAVKDSSAPHGLRLLIEDYPYAVDGLEIWAVIKSWVQEYVSLYYAKDDDVKSDPELQHWWKEAVEKGHADLKDKPWWPKLQTLEELVEICTIIIWTGSALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVNSHQKAYLRTITSKFQTMIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLKDIEEKLASKNKDEKLRNRFGPVELPYTLLHPTSEEGLTFRGIPNSISI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00365 874 ProSitePatterns Lipoxygenases iron-binding region signature 1. 530 544 IPR020833 GO:0016702|GO:0046872
Vimu4g00365 874 Gene3D - 188 286 - -
Vimu4g00365 874 PRINTS Lipoxygenase signature 550 570 IPR013819 GO:0016702|GO:0046872
Vimu4g00365 874 PRINTS Lipoxygenase signature 530 547 IPR013819 GO:0016702|GO:0046872
Vimu4g00365 874 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Vimu4g00365 874 Pfam PLAT/LH2 domain 90 182 IPR001024 GO:0005515
Vimu4g00365 874 ProSitePatterns Lipoxygenases iron-binding region signature 2. 557 567 IPR020834 GO:0016702|GO:0046872
Vimu4g00365 874 Gene3D PLAT/LH2 domain 19 187 - -
Vimu4g00365 874 Pfam Lipoxygenase 196 857 IPR013819 GO:0016702|GO:0046872
Vimu4g00365 874 CDD PLAT_LH2 25 184 IPR042057 -
Vimu4g00365 874 FunFam Lipoxygenase 509 873 - -
Vimu4g00365 874 SMART LH2_4 24 184 IPR001024 GO:0005515
Vimu4g00365 874 FunFam Lipoxygenase 188 286 - -
Vimu4g00365 874 SUPERFAMILY Lipoxigenase 188 874 IPR036226 -
Vimu4g00365 874 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 24 187 IPR036392 GO:0005515
Vimu4g00365 874 Gene3D - 376 507 - -
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 218 234 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 401 420 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 251 270 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 152 170 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 465 489 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 787 801 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 362 378 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 179 200 IPR001246 GO:0016491
Vimu4g00365 874 PRINTS Plant lipoxygenase signature 317 338 IPR001246 GO:0016491
Vimu4g00365 874 FunFam Lipoxygenase 376 507 - -
Vimu4g00365 874 Gene3D - 508 873 - -
Vimu4g00365 874 ProSiteProfiles PLAT domain profile. 57 182 IPR001024 GO:0005515
Vimu4g00365 874 PANTHER LIPOXYGENASE 24 874 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu4g00365 874 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 186 874 IPR013819 GO:0016702|GO:0046872
Vimu4g00365 874 Gene3D - 287 375 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00365 Vimu-Chr4 2617816 2621363 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00365 15 874 Acyl Lipid Metabolism Gene Families AT1G55020 56.899 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00365 K15718 - gmx:547774 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00365 4 2617816 2621363 Vimu11g03011 11 49741662 49748508 PCT