Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03011 ATGTCGAACGGTCGCGAAATGAAGGGGACACTGGTTTTGATGACAAAGAATATGTTGAACTTCAATCACAAAGTTAGAAAAGTTGATGCCATCTCCACCTCTAAAGTTACAAAAGCTGATGAGATCTCCACCTCTAAGATTGAGATGCGATTGCTCGGTGCTGCTGGGAAGGGAAAGAAAACCTTGTTGGGGAAACATCTTGCTTCGTCATCAAACTTGGGAAATGGACAAGATTCATTCAGTGTTACTTTTAAATTGGATGAGAATTTTAAAACTCCAGAAGCATTTTTCATCAAAAACTCAATGGAATCTGAGTTTTTCCTTGTCAGTCTCACCCTCAAAGGCAATTCAAATGACATTCACTTTGTTTGCAATTCATGGATCTACAGTGCTCAAAAAGAACGTATTTTCTTTATCAACAAGACGTATCTTCCGGATAAAACTCCAAAATATTTGATAGAGCCCAGAAAAGAAGAATTGAAAAGTCTGAGAGGTGATGGAAAAGGAACGCTCAAAGAACATGATAGGATCTATGATTATGATGTGTATAATGATTTGGCCAACCCAGACAAGAGTGTTCTTGGAGGTACCGATGACTATCCATACCCTCGCAGAGGAAGAACTGGCAGAAAACCAACAAAGAAAGACAAGAACAGTGAGACTTACATTCCGAGAGATGAAAATCTTGGTCACTTGAAGTCGTCAGACTTCCTTACATACGGAATAAAGCTCTTGTCTGAGAATGTCATAACTCGGTTTAAATCTGCTTCTGGTTTAATGAATGAGTTTGATAAGTTTGATGACATTAATGAACTCTTTGAAAGAGAACTACCTCATAATCTTCCAGAAGACGTAGTCAGAAACATTAAGGAAATCTCCCGCGTTATTGGTGAACGGTTCCTTAAGTTTCCAACACCTGATGTCATCAGAGCTGGTGAGTCTGCATGGAGGACCGATGAAGAATTTGGAAGAGAGATGCTTGCTGGAGTTAATCCTTGCGTAATTCAACGCCTTCAAGAGTTCCCTCCAAAGCTAGATGCTTCTATGTATGGTGATCAAACTAGCACAATCACCAGAGAACATTTGAAAAAAAACCTTGGTAATCTCACCGTTGAAGAGGCACTTAATAGTAAAAAATTGTTCATATTAGATTACCATGATGCATTCTTACCATTTCTGAAGAAGATCAATGGAGATCACAACACAAAGTGTTACGCCACAAGGACAATATTCCTTTTATTGAAAGATGGCACATTGAAGCCTTTGGCTATTGAATTAAGTGAGGGAGATACGTCTGGTGCTCATAGTACAGTCATCTTGCCTGCAAAAGAAGGCGTTGAAGGCACAATTTGGCTATTGGCCAAGGCTTATGTTCTTGTAAACGACTCCAGTTATCATCAACTCGTGACCCACTGGTTAAATACTCATGCCATAATTGAGCCATTTGTCATAGCAACAAATAGAAATCTCAGTGTGCTCCACCCTATTCATAAACTTCTATCACCACACTATCGTGGCACCATGAATATTAACAGAATTGCTCGACAATCACTCTTCAACGCAGGTGGCATTATTGAGCAATCTTTTTTGCCTGGTTGTGACGCTTTGAAAATGTCTTCAGCAGCTTACAAGAATTGGGTTTTCACTGATCAAGCCCTTCCTAATGATCTTGTCAAGAGAGGAATGGCGATTAAGCATCCATCTGCCCCACATGGACTTCGTCTTGTGATACAAGACTACCCTTATGCTGTTGATGGACTAGAGATTTGGAGTGCTATAGAGAGATGGGTTAAGGACTATGTCGACGTGTACTATTCCAAAGACAGTGATGTTAGTAACGACACTGAACTCGGAGACTGGTGGAAGGAAGTTGTTGAGAAGGGTCACGGTGACTTAAAAGATAAGCCATGGTGGCCTAAGTTGAAAACTCTTCAAGATCTGTATGAAATTTGCAGTATTATCATATGGACTGCTTCAGGTCTGCATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGCTATATCCTAAACCGTCCAACTCTAAGCAGAAGATTAATCCCGAAAGAAGGATCAGATTATGATGAGATGGAGAAGAATCCTGAAAAGGCTTATTTGAGAACATTTACACCTAAGTACGAGACTCTTGTTCACCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGGTCTACCTTGGACAGAGGGACAATCCATATTGGACTTATGACACAAAGGCTCTTCGAGCTTTTGAAAAGTTTGGAGAAAAGCTGAAGGACATTGAAGAGAAAATCAAAAGGAGGAACAGAGATTCAAGTCTTAGAAACCGTAATGGAGCAGTTCAGATGCCTTACACTGTGCTTCTTCCTAACAATGAGGAAGGTCTCACTTTCAGAGGAATTCCGAACAGCATATCTATCTAA 2430 0.4012 MSNGREMKGTLVLMTKNMLNFNHKVRKVDAISTSKVTKADEISTSKIEMRLLGAAGKGKKTLLGKHLASSSNLGNGQDSFSVTFKLDENFKTPEAFFIKNSMESEFFLVSLTLKGNSNDIHFVCNSWIYSAQKERIFFINKTYLPDKTPKYLIEPRKEELKSLRGDGKGTLKEHDRIYDYDVYNDLANPDKSVLGGTDDYPYPRRGRTGRKPTKKDKNSETYIPRDENLGHLKSSDFLTYGIKLLSENVITRFKSASGLMNEFDKFDDINELFERELPHNLPEDVVRNIKEISRVIGERFLKFPTPDVIRAGESAWRTDEEFGREMLAGVNPCVIQRLQEFPPKLDASMYGDQTSTITREHLKKNLGNLTVEEALNSKKLFILDYHDAFLPFLKKINGDHNTKCYATRTIFLLLKDGTLKPLAIELSEGDTSGAHSTVILPAKEGVEGTIWLLAKAYVLVNDSSYHQLVTHWLNTHAIIEPFVIATNRNLSVLHPIHKLLSPHYRGTMNINRIARQSLFNAGGIIEQSFLPGCDALKMSSAAYKNWVFTDQALPNDLVKRGMAIKHPSAPHGLRLVIQDYPYAVDGLEIWSAIERWVKDYVDVYYSKDSDVSNDTELGDWWKEVVEKGHGDLKDKPWWPKLKTLQDLYEICSIIIWTASGLHAAVNFGQYPYGGYILNRPTLSRRLIPKEGSDYDEMEKNPEKAYLRTFTPKYETLVHLSVIEILSRHASDEVYLGQRDNPYWTYDTKALRAFEKFGEKLKDIEEKIKRRNRDSSLRNRNGAVQMPYTVLLPNNEEGLTFRGIPNSISI 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03011 809 PRINTS Lipoxygenase signature 448 465 IPR013819 GO:0016702|GO:0046872
Vimu11g03011 809 PRINTS Lipoxygenase signature 466 483 IPR013819 GO:0016702|GO:0046872
Vimu11g03011 809 PRINTS Lipoxygenase signature 486 506 IPR013819 GO:0016702|GO:0046872
Vimu11g03011 809 FunFam Lipoxygenase 445 808 - -
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 112 130 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 338 357 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 301 317 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 722 736 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 201 220 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 174 190 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 405 429 IPR001246 GO:0016491
Vimu11g03011 809 PRINTS Plant lipoxygenase signature 135 156 IPR001246 GO:0016491
Vimu11g03011 809 PANTHER LIPOXYGENASE 6 809 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03011 809 Pfam Lipoxygenase 154 792 IPR013819 GO:0016702|GO:0046872
Vimu11g03011 809 Gene3D - 315 443 - -
Vimu11g03011 809 ProSitePatterns Lipoxygenases iron-binding region signature 1. 466 480 IPR020833 GO:0016702|GO:0046872
Vimu11g03011 809 ProSiteProfiles PLAT domain profile. 25 142 IPR001024 GO:0005515
Vimu11g03011 809 Pfam PLAT/LH2 domain 43 138 IPR001024 GO:0005515
Vimu11g03011 809 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 142 809 IPR013819 GO:0016702|GO:0046872
Vimu11g03011 809 SUPERFAMILY Lipoxigenase 145 809 IPR036226 -
Vimu11g03011 809 Gene3D - 233 314 IPR027433 -
Vimu11g03011 809 Gene3D PLAT/LH2 domain 1 143 - -
Vimu11g03011 809 Gene3D - 144 232 - -
Vimu11g03011 809 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 143 IPR036392 GO:0005515
Vimu11g03011 809 Gene3D - 444 808 - -
Vimu11g03011 809 MobiDBLite consensus disorder prediction 194 222 - -
Vimu11g03011 809 ProSitePatterns Lipoxygenases iron-binding region signature 2. 493 503 IPR020834 GO:0016702|GO:0046872
Vimu11g03011 809 SMART LH2_4 5 140 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03011 Vimu-Chr11 49741662 49748508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03011 2 809 Acyl Lipid Metabolism Gene Families AT1G55020 53.458 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03011 K15718 - gmx:100127399 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00365 4 2617816 2621363 Vimu11g03011 11 49741662 49748508 PCT