Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00362 ATGTTGGGAGGAATTTTCGGAGGAAACAAGCAGAAGATAAAGGGTACTGTGGTGCTTATGCGAAAGAATGTCTTGGACATTAACAGCATCCTCAACCCTGCCAGCGTCATTGACAACGTTTTCGATTTGGCCGGCAGTCTCGTCGACGCCGTTACTGCTTTCGCCACCTCCATCTCCATCCAGCTCATCAGTTCCACCAAGGCTGATGGACAAGGGAAAGGAAAAGTTGGAACAGCTACGAAGTTAAGAGGACAGATATCATTGCCAACTTTGGGAGCGAGTGAAGAAGCATACGATGTTGATTTTGAATGGGACAGTGACTTCGGAATTCCTGGCGCCTTTTACATTAAGAACTTCATGCAGAATGAGTTCTACCTCAAATCTCTCATTCTCCAGGACATTCCTAACCACGGAACCATTCACTTCGTCTGCAACTCCTGGGTTTACAATGATAAGAAATACAAAACTCCTCGTATTTTCTTTGCCAACAACACGTATCTTCCTGGCGAGACACCAGCCCCACTTGTGAAGTACAGAGAAGAAGAATTGAAGGTTGTAAGAGGCGATGGAACTGGAGAACGAAAGGAATGGGATAGAATTTATGATTACGATGTCTACAATGACTTGGGCAACCCAGATAAAGGTGAAGCCTATGCTCGCCCTGTTCTTGGAGGTTCTACCTTGCCTTACCCTCGTAGAGGAAGAACTGGAAGACCCAAAACTAAAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCAAGAGACGAAGCGTTTGGTCACTTGAAGTCATCCGATTTTCTCGCTTATGCATTGAAATCGGTATCCCAAGATGTGTTACCAGTCTTGACTGATGCATTCGATGGAAATATTCTGAGTCTTGAGTTTGATAATTTTGCTGAAGTGCGCAAGCTTTATGAAGGTGGAGTTACATTGCCCACAAACTTTCTCAGCAAATACGCTCCCATACCAATTGTCAAGGAACTTTTTCGAAGTGATGGTGAACAATTCCTCAAGTATCCACCTCCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACCATTGCTGGAGTCAATCCTAATGTCATTAAGATTCTTAAGGAATTCCCACCAAGTAGCAAGCTAAACACTCAAGCCTTTGGTGACCATACCTCTATAATAAAGAAAGAGCATTTGGAGCCTCAATTAGGAGGGCTCACTGTTGAGCAGGCTATCGAGAACAATAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATTCATCTACCACAAAGACTTATGCCACGAGAACCATATTTTTCTTGAAAGAGGATGGAACTCTGACACCATTGGCCATCGAGTTAAGTAAGCCACATGGTCAGGGTGAAGAATACGGTCCTATCAGTGAAGTCTATGTGCCTGCATATGAGGGAGTGGAAGCTTACATTTGGTTACTGGCAAAGGCTTATGTTGTTATCAATGACTCGTGCTACCATCAAATCATTAGCCATTGGTATGATATCATCGATTCCCATTGGATTGTTGAGCCTTTCGTCATAGCAACGAACAGACAATTGAGTGTGGTTCACCCTGTTTACAAGCTCCTGTTTCCTCACTACCGTGATACCATGAACATCAATTCACTGGCCCGCAAGTCCTTGGTCAACGCAGATGGTATCATAGAGAAAACATTCTTGTGGAGTAGATACTCTTTGGAAATGTCTGCTATAATTTACAAGGACTGGTCTTTCGTTGATCAAGCACTACCTAATGATCTTGTCAAGAGAGGAGTTGCAGTTAAAGATGCATCTGCTCCCCACGGTGTTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGCAGCCATCAAGTCGTGGGTGGAAGAGTATGTGGCATTCTATTACAAGTCAGATGAGGCACTTCAAAAAGACCCTGAACTTCAAGCTTGGTGGAAAGAACTTGTTCAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAAACACGTGGAGAGTTGGTTGACGTCTCCACTACCCTGATTTGGATATCTTCAGCCCTTCATGCAGCTGTTAACTTCGGACAATATCCATACGGTGGTTTAATCTTGAACAGGCCAACCATTAGCAGAAGATTCATGCCTGAGAAAGGGTCTGCTGAATATGAGGCATTGGGTAAGAATCCTGAGAAGGAGTTTTTGAGAACTATTACTGGTAAGAAAGAGACCCTGATTGACCTTACAGTTATAGAGATATTGTCAAGGCACGCATCTGATGAGTTCTACCTTGGAGAGAGAGATGGTGGTGACTTTTGGACTTCAGATGCAGGGCCATTGGAGGCCTTTAAGAGGTTTGGAAAGAAACTTGCTGAAATTGAACAAAAACTTGTACAGAAAAACAATGATGAGACATTGAGAAACCGCACTGGACCTGCTAAAATGCCTTACACTCTTCTCTTTCCTTCCAGTGAGGAGGGATTGACTTTCAGAGGAATACCAAACAGTATCTCTATCTAA 2580 0.4322 MLGGIFGGNKQKIKGTVVLMRKNVLDINSILNPASVIDNVFDLAGSLVDAVTAFATSISIQLISSTKADGQGKGKVGTATKLRGQISLPTLGASEEAYDVDFEWDSDFGIPGAFYIKNFMQNEFYLKSLILQDIPNHGTIHFVCNSWVYNDKKYKTPRIFFANNTYLPGETPAPLVKYREEELKVVRGDGTGERKEWDRIYDYDVYNDLGNPDKGEAYARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYALKSVSQDVLPVLTDAFDGNILSLEFDNFAEVRKLYEGGVTLPTNFLSKYAPIPIVKELFRSDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILKEFPPSSKLNTQAFGDHTSIIKKEHLEPQLGGLTVEQAIENNKLFILDHHDYLIPYLRKINSSTTKTYATRTIFFLKEDGTLTPLAIELSKPHGQGEEYGPISEVYVPAYEGVEAYIWLLAKAYVVINDSCYHQIISHWYDIIDSHWIVEPFVIATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWSRYSLEMSAIIYKDWSFVDQALPNDLVKRGVAVKDASAPHGVKLLIEDYPYASDGLEIWAAIKSWVEEYVAFYYKSDEALQKDPELQAWWKELVQVGHGDLKDKPWWPKMQTRGELVDVSTTLIWISSALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYEALGKNPEKEFLRTITGKKETLIDLTVIEILSRHASDEFYLGERDGGDFWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNDETLRNRTGPAKMPYTLLFPSSEEGLTFRGIPNSISI 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00362 859 Gene3D - 167 265 - -
Vimu4g00362 859 Gene3D - 266 354 IPR027433 -
Vimu4g00362 859 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 859 IPR013819 GO:0016702|GO:0046872
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 446 470 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Vimu4g00362 859 PRINTS Plant lipoxygenase signature 771 785 IPR001246 GO:0016491
Vimu4g00362 859 SMART LH2_4 11 163 IPR001024 GO:0005515
Vimu4g00362 859 FunFam Lipoxygenase 167 265 - -
Vimu4g00362 859 Gene3D - 489 858 - -
Vimu4g00362 859 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
Vimu4g00362 859 PRINTS Lipoxygenase signature 493 510 IPR013819 GO:0016702|GO:0046872
Vimu4g00362 859 SUPERFAMILY Lipoxigenase 168 859 IPR036226 -
Vimu4g00362 859 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 166 IPR036392 GO:0005515
Vimu4g00362 859 ProSiteProfiles PLAT domain profile. 36 162 IPR001024 GO:0005515
Vimu4g00362 859 PANTHER LIPOXYGENASE 10 859 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu4g00362 859 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
Vimu4g00362 859 CDD PLAT_LH2 12 163 IPR042057 -
Vimu4g00362 859 Pfam PLAT/LH2 domain 66 161 IPR001024 GO:0005515
Vimu4g00362 859 FunFam Lipoxygenase 490 858 - -
Vimu4g00362 859 Gene3D PLAT/LH2 domain 5 166 - -
Vimu4g00362 859 MobiDBLite consensus disorder prediction 217 252 - -
Vimu4g00362 859 FunFam Lipoxygenase 355 488 - -
Vimu4g00362 859 Pfam Lipoxygenase 175 842 IPR013819 GO:0016702|GO:0046872
Vimu4g00362 859 Gene3D - 355 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00362 Vimu-Chr4 2605661 2609392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00362 7 859 Acyl Lipid Metabolism Gene Families AT1G55020 56.322 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00362 K15718 - gmx:547860 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00362 4 2605661 2609392 Vimu11g03000 11 49600150 49602441 PCT