Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03000 ATGTTAGCGGGATTAGCAGTTGAAGACCCCTCTGCTCCTCATGGCCTTCGTCTTGTGATAAAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGATATGGGTCCAAGATTATGTGTCCTTGTATTACCCTACAGATGTGGCAGTTCAACAAGATACTGAACTTCAAGCATGGTGGAAGGAGGCTGTAGAGAAGGGTCATGGTGACTTAAAAGATAAGCCTTGGTGGCCTAAAATGCATACGACTGAAGATCTCATTAAATCTTGCTCTATCATCATATGGACAGCTTCTGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTACATCGTGAACCGTCCAACTCTGACTAGAAGATTTATCCCTGAACCAGGAACCAAAGAATATGATGAGATGGTGAAGAATCCTCAAAAGGCATATTTGAACACAATCACACCTAAGTTCGAGAGCCTTGTTGACATTTCAGTGTTAGAGATATTGTCAAGGCATGCCTCTGATGAGATCTATCTTGGGGAGAGAGATAGTCCATATTGGACAACTGATTCAAAGGCACTAGAAGCTTTCAAAAAGTTTGGAAGCAAACTGACAGAAATTGAAGGAAAGATCACAGCAAGGAACAATGATCCAAGTCTGAGAAGCCGTCATGGGCCAGTTCAGTTGCCATACACCTTACTCCTTCGTTCAAGCGAGGAAGGAATGACTTTCAGAGGAATTCCTAATAGTATCTCTATCTGA 762 0.4199 MLAGLAVEDPSAPHGLRLVIKDYPYAVDGLEIWDAIKIWVQDYVSLYYPTDVAVQQDTELQAWWKEAVEKGHGDLKDKPWWPKMHTTEDLIKSCSIIIWTASALHAAVNFGQYPYGGYIVNRPTLTRRFIPEPGTKEYDEMVKNPQKAYLNTITPKFESLVDISVLEILSRHASDEIYLGERDSPYWTTDSKALEAFKKFGSKLTEIEGKITARNNDPSLRSRHGPVQLPYTLLLRSSEEGMTFRGIPNSISI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03000 253 Gene3D - 2 252 - -
Vimu11g03000 253 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 253 IPR013819 GO:0016702|GO:0046872
Vimu11g03000 253 Pfam Lipoxygenase 4 235 IPR013819 GO:0016702|GO:0046872
Vimu11g03000 253 PANTHER LIPOXYGENASE 4 253 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03000 253 SUPERFAMILY Lipoxigenase 4 253 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03000 Vimu-Chr11 49600150 49602441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03000 4 253 Acyl Lipid Metabolism Gene Families AT1G55020 62.000 7.95e-113 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03000 K15718 - gmx:547856 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00362 4 2605661 2609392 Vimu11g03000 11 49600150 49602441 PCT